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. 2017 May 24;33(18):2818–2828. doi: 10.1093/bioinformatics/btx326

Table 2.

One-sided Wilcoxon signed rank test results for testing whether the Type-I error distribution of experiments generated under the parameter setting specified in the row has lower mean of ranks compared to the distribution of Type-I errors generated under the parameter setting specified in the column, where the null hypothesis states that there is no difference

Wilcoxon signed rank test P-values
wGC wM wGCM woGCM wGC wM wGCM woGCM
Non-expressed(EOO,woIF) Non-expressed(NOOB,woIF)
wGC 2.2e-16 2.2e-16 2.2e-16 2.2e-16 2.2e-16 2.2e-16
wM 2.2e-16 2.2e-16
wGCM 2.2e-16 2.2e-16 2.2e-16 2.2e-16
woGCM
Non-expressed(EOO,wIF) Non-expressed(NOOB,wIF)
wGC 1.9e-04 2.2e-16 2.2e-16 1.004e-14 2.2e-16 6.524e-15
wM 2.2e-16 2.2e-16 2.2e-16
wGCM
woGCM 1.97e-04 2.39e-11
Expressed(EOO,woIF) Expressed(NOOB,woIF)
wGC 5.47e-12 1.2e-12
wM 1.18e-09 5.5e-12 1.75e-09 1.2e-12
wGCM 5.51e-10 1.17e-09 5.5e-12 3.75e-10 5.38e-10 1.2e-12
woGCM
Expressed(EOO,wIF) Expressed(NOOB,wIF)
wGC 1.43e-04 3.93e-03
wM 1.14e-09 2.78e-06 7.88e-10 2.57e-09 7.80e-06 1.75e-09
wGCM 1.15e-09 7.70e-10 2.56e-09 1.75e-09
woGCM
*

Note: A P-value presented in the cell indicates that setting in the corresponding row has a lower mean of ranks in Type-I error distribution than the setting in the corresponding column; if the cell is empty the opposite holds. The P-values are less than or equal to the actual test result. The best parameter setting in each experiment is shown in bold.