Table 5.
Elapsed CPU times (in seconds) for GLANET and GAT runs for given input query are provided
| Number of input intervals | Number of samplings | Run times (in s) |
|
|---|---|---|---|
| GLANET | GAT | ||
| 500 | 1000 | 690 | 145 |
| 500 | 10 000 | 856 | 1463 |
| 500 | 100 000 | 2140 | 14 353 |
| 1000 | 1000 | 1283 | 147 |
| 1000 | 10 000 | 1165 | 1538 |
| 1000 | 100 000 | 3866 | 14 341 |
| 2000 | 1000 | 1179 | 155 |
| 2000 | 10 000 | 1270 | 1583 |
| 2000 | 100 000 | 6257 | 16 039 |
*
Note: Input intervals are randomly selected from promoter regions of non-expressing genes in GM12878 cell line from (Non-Expressing,CompletelyDiscard) pool, where each interval is 601 bp long. Used ENCODE subset library includes 12 histone modifications and POL2. Both GLANET and GAT are run under the parameter setting (NOOB,wIF,woGCM). Results for 1000 and 10 000 samplings are averaged over 10 runs. For 100 000 samplings, each run time in the table denotes the average run-time from 5 runs. Bold entries indicate the faster runtimes for each row.