Table 1.
Number of single nucleotide polymorphisms (SNPs) per chromosome of Phaseolus vulgaris generated by ApeKI-GBS (genotyping by sequencing) technology in the IAC (Agronomic Institute) diversity panel.
| Number of SNPs | ||||
|---|---|---|---|---|
| Chromosome | Physical Length (Mb) 1 | Number of Genes 1 | MD ≤ 0.10 | MAF ≥ 0.05 |
| Pv01 | 52.18 | 2116 | 2100 | 993 |
| Pv02 | 49.03 | 2695 | 2678 | 1261 |
| Pv03 | 52.21 | 2294 | 2407 | 1063 |
| Pv04 | 45.79 | 1035 | 1378 | 748 |
| Pv05 | 40.23 | 1349 | 1335 | 695 |
| Pv06 | 31.97 | 1649 | 1635 | 841 |
| Pv07 | 51.69 | 2146 | 2133 | 1082 |
| Pv08 | 59.63 | 2067 | 2453 | 1188 |
| Pv09 | 37.39 | 2134 | 1935 | 869 |
| Pv10 | 43.21 | 1020 | 1379 | 680 |
| Pv11 | 50.20 | 1274 | 1848 | 942 |
| Total | − | 19,779 | 21,281 | 10,362 |
MD: missing data; MAF: minor allele frequency. 1 According to the Phaseolus vulgaris reference genome [55].