Table 1.
Frequency analysis of important genes in the 27 deep-learned network nodes at the top hidden layer. Only the top 100 frequently occurring genes are listed for brevity.
| Gene | Frequency | Gene | Frequency | Gene | Frequency | Gene | Frequency |
|---|---|---|---|---|---|---|---|
| TNR | 17 | DPYSL4 | 10 | MEG3 | 9 | GRB10 | 8 |
| GAD1 | 16 | EGFR | 10 | NES | 9 | KDELR3 | 8 |
| TMSB15B | 15 | F13A1 | 10 | NPTX2 | 9 | KIF1A | 8 |
| POSTN | 15 | FBN2 | 10 | NRXN1 | 9 | LSAMP | 8 |
| SCG3 | 15 | NEFM | 10 | NTSR2 | 9 | LYPD1 | 8 |
| PLA2G2A | 14 | PTGDS | 10 | PEG3 | 9 | MMP9 | 8 |
| NNMT | 13 | RAB6B | 10 | PROM1 | 9 | MYT1L | 8 |
| CHI3L1 | 13 | RAPGEF4 | 10 | SH3GL3 | 9 | NMNAT2 | 8 |
| ELAVL4 | 13 | RUNDC3A | 10 | SOX11 | 9 | NNAT | 8 |
| TF | 13 | SERPINA3 | 10 | SPOCK1 | 9 | NOL4 | 8 |
| UGT8 | 13 | SH3GL2 | 10 | TMEM35 | 9 | NSG1 | 8 |
| AQP1 | 12 | SNAP25 | 10 | C4B | 8 | PLBD1 | 8 |
| COL6A3 | 12 | TCEAL2 | 10 | SLC16A3 | 8 | RGS1 | 8 |
| ERBB3 | 12 | TIMP4 | 10 | SOD2 | 8 | RGS17 | 8 |
| KCNQ2 | 12 | LOC101060835 | 9 | AIM1 | 8 | RGS4 | 8 |
| LTF | 12 | ADAM22 | 9 | ANXA1 | 8 | RTN1 | 8 |
| MEOX2 | 12 | BCAN | 9 | APOD | 8 | S100A2 | 8 |
| PCDH9 | 12 | C1orf61 | 9 | ATP2B2 | 8 | SLC17A7 | 8 |
| STMN2 | 12 | DDX25 | 9 | ATP6V1G2 | 8 | SRD5A1 | 8 |
| FCGR2B | 11 | ETNPPL | 9 | CFI | 8 | STC1 | 8 |
| FGFR3 | 11 | FAM107A | 9 | DSP | 8 | STEAP3 | 8 |
| SLC1A2 | 11 | GABRB1 | 9 | ENPP2 | 8 | STK32B | 8 |
| CA10 | 10 | GDF15 | 9 | FCGBP | 8 | TAC1 | 8 |
| CXCL14 | 10 | GNAO1 | 9 | FUT9 | 8 | VSNL1 | 8 |
| CXorf57 | 10 | LGI1 | 9 | FZD6 | 8 | WIF1 | 8 |