Table 1.
Novel Atlantic salmon miRNAs identified in this study.
| miRNA ID 1 | Mature-5p (5´-3´) 2 | Mature-3p (5´-3´) 2 | Precursor Sequence (5´-3´) |
|---|---|---|---|
| ssa-mir-novel-1 | UCAGUGAUGUGUACGCCAAAGGU | UCGGCAUACACAUCACUGACA | UCAGUGAUGUGUACGCCAAAGGUGUAAAGCUUCAAGUUCCUCGGCAUACACAUCACUGACA |
| ssa-mir-novel-2 | AGUUUCCCGGACACAGAUUAAGCC | UUUUGUCUGUCUGGGAAACCGG | AGUUUCCCGGACACAGAUUAAGCCUAGUCAUAAUUAUUAUGUUUUGUCUGUCUGGGAAACCGG |
| ssa-mir-novel-3 | UGACGAUACCUUUGGAACAAGA | UUGUACCAAUAGUAAAGUCUGA | UGACGAUACCUUUGGAACAAGAGGUGAAUUACGUCUUAUGCUCUUGUACCAAUAGUAAAGUCUGA |
| ssa-mir-novel-4 | CGGAUCGCUGCGUUCACCAUU | AUGGUGAAUGCAACGAUAAGGC | CGGAUCGCUGCGUUCACCAUUAUAUUUAACUUCAACAGAAUGGUGAAUGCAACGAUAAGGC |
| ssa-mir-novel-5 | UACGGUAUGUACUGUAGGCUAC | UAGGCUACGGUAUGUACUGAAG | UACGGUAUGUACUGUAGGCUACGGUAUGUUAUGUACUGUAGGCUACGGUAUGUACUGAAG |
| ssa-mir-novel-6 | UGAGCCUUGUCCUGGACUAAGA | UCAGUCCAUGACUAGGCUUAAC | UGAGCCUUGUCCUGGACUAAGAAGUACUUCCAAUGGCUAUUUUCAGUCCAUGACUAGGCUUAAC |
| ssa-mir-novel-7 | UUGCUGGUGACACUGUCUGUGA | AAGGCACACUUCACCAGUAUGG | UUGCUGGUGACACUGUCUGUGAUUUAUUUAGAAUUCAAGGCACACUUCACCAGUAUGG |
| ssa-mir-novel-8 | AGACACCUGACACAGCCCCCAUU | UGGGUCUGUGUCUAUUGUCUCU | AGACACCUGACACAGCCCCCAUUCUAUCUCAUAAAAGUGGGUCUGUGUCUAUUGUCUCU |
| ssa-mir-novel-9 | UAGGCGUGUCACUGCGUGUCACA | UGCGCACGGGGCCACGCUCUGC | UAGGCGUGUCACUGCGUGUCACAGUCACUGCUUGCGCACGGGGCCACGCUCUGC |
| ssa-mir-novel-10 | AGGUCUGUUUGUGCUGUCUUCC | GUGACUGCACAAACGGAUCUGG | AGGUCUGUUUGUGCUGUCUUCCAUGGCUUUGGUGACUGCACAAACGGAUCUGG |
| ssa-mir-novel-11 | AUUGUUCAGGGCAUUCAUUUCU | UAAGUGAACCCUUGAGACAAUU | AUUGUUCAGGGCAUUCAUUUCUUGUGAACCAAUCAAUAAGUGAACCCUUGAGACAAUU |
| ssa-mir-novel-12 | UUCGCCCCUGAGGACACACGGU | CCGAAUCCACAGAAGUGAUGC | UUCGCCCCUGAGGACACACGGUGUUUUCUUUUAAUAGCACCGAAUCCACAGAAGUGAUGC |
| ssa-mir-novel-13 | CCUUGACCACGUAACCUGACCA | UUAGGUCAGAUGUGGUCAGGAGA | CCUUGACCACGUAACCUGACCAUAGUUUUCUUGGUUAGGUCAGAUGUGGUCAGGAGA |
| ssa-mir-novel-14 | GGGAAUAUACAUGACUGUGAUU | UCACAGUCGUGUAUAUUCCCUC | GGGAAUAUACAUGACUGUGAUUAUGAUUGAAGAGAAUAAUCACAGUCGUGUAUAUUCCCUC |
| ssa-mir-novel-15 | CAGAGCUCUGCUAUCUGCUGUCU | AAGGAGAAAACAGAGCUCUGCU | CAGAGCUCUGCUAUCUGCUGUCUGUAUCUUGUUAAAGGGGAAGGAGAAAACAGAGCUCUGCU |
| ssa-mir-novel-16 | UUGCUGUUGACACUGUCUGUG | UCAAGGCACACUUAACCAGCAUGG | UUGCUGUUGACACUGUCUGUGAUUUAUUUAAGGCACACUUCAAGGCACACUUAACCAGCAUGG |
| ssa-mir-novel-17 | GCGUCUCAGAGGUCAAACACAGU | UGUGUUAGGCCUCCGAGUCUGA | GCGUCUCAGAGGUCAAACACAGUAAGUCAUAUUAAGCUGUGUUAGGCCUCCGAGUCUGA |
1 Temporary annotation for the novel miRNAs identified. These will be renamed by miRBase when uploaded in the miRNA database. 2 The dominant mature miRNA is given in bold. Genomic location of the novel precursors is given in Table S4.