Table 1.
Publicly available RNA-Seq data sets analyzed in this study
| Id | Accession | Organism | Cell types | Reference |
|---|---|---|---|---|
| A | SRP011318 | Mouse | Adipose progenitor cells, fibroblasts, hematopoietic progenitor cells, iPSCs | [95] |
| B | SRP016568 | Human | Fibroblasts, iPSCs | [21] |
| C | SRP026281 | Mouse | Fibroblasts, iPSCs (chemical) | [96] |
| D | SRP033561 | Mouse | Fibroblasts, iPSCs | [97] |
| E | SRP033569 | Human | Fibroblasts, iPSCs (retrovirus), iPSCs (Sendai virus) | [98] |
| F | SRP033700 | Mouse | Fibroblasts, iPSCs | [99] |
| G | SRP045688 | Mouse | Fibroblasts, iPSCs | [100] |
| H | SRP045999 | Chimpanzee, Human | Fibroblasts, iPSCs, lymphoblastoids (human only) | [101] |
| I | SRP049340 | Human | hiF, hiF-T, iPSCs | [28] |
| J | SRP052014 | Mouse | iPSCs, spermatogonial stem cells | [102] |
| K | SRP056571 | Mouse | Fibroblasts, iPSCs | [103] |
| L | SRP059670 | Mouse | Fibroblasts, iPSCs | [15] |
| M | SRP063867 | Human | Fibroblasts, iPSCs | [104] |
| N | SRP064357 | Mouse | Fibroblasts, iPSCs (chemical) | [105] |
The columns indicate NCBI Sequence Read Archive (SRA) accession numbers, the organism or organisms and cell types from which samples were prepared, and a reference to the study for which the data was originally generated