Table 2.
Relative abundance of Streptomyces species in metagenomic bacterial taxonomic profiling (MetaPhlAn2)
| Species | GS1 | GS2 | GS3 | GS4 | GS5 | GS6 | GS7 | GS8 | GS9 | GS10 | Pct in Bac | Pct in Strep |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Streptomyces acidiscabies | 4.82E-03 | 4.67E-03 | 2.32E-03 | 6.22E-03 | 1.44E-03 | 0.00E+ 00 | 4.09E-04 | 4.64E-04 | 1.71E-03 | 0.00E+00 | 0.2205% | 69.18% |
| Streptomyces turgidiscabies | 1.07E-03 | 1.01E-03 | 5.52E-04 | 1.32E-03 | 1.92E-04 | 4.80E-04 | 3.99E-04 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 0.0502% | 15.76% |
| Streptomyces chartreusis | 0.00E+00 | 2.69E-04 | 5.85E-05 | 1.15E-04 | 0.00E+00 | 6.82E-04 | 1.03E-03 | 6.46E-04 | 5.52E-04 | 8.89E-05 | 0.0344% | 10.81% |
| Streptomyces flavogriseus | 0.00E+00 | 0.00E+00 | 4.65E-05 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 9.57E-05 | 0.00E+00 | 7.24E-04 | 0.00E+00 | 0.0087% | 2.72% |
| Streptomyces lividans | 0.00E+00 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 3.75E-04 | 0.00E+00 | 0.00E+00 | 7.23E-05 | 0.0045% | 1.40% |
| Streptomyces coelicolor | 0.00E+00 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 4.30E-05 | 0.00E+00 | 0.00E+00 | 0.00E+00 | 0.0004% | 0.14% |
| Sum | 5.88E-03 | 5.95E-03 | 2.97E-03 | 7.65E-03 | 1.63E-03 | 1.16E-03 | 2.35E-03 | 1.11E-03 | 2.99E-03 | 1.61E-04 | 0.3187% | |
| Pathogenic Streptomyces | 5.88E-03 | 5.69E-03 | 2.87E-03 | 7.54E-03 | 1.63E-03 | 4.80E-04 | 8.08E-04 | 4.64E-04 | 1.71E-03 | 0.00E+00 | 0.2707% | 84.94% |
| Non-pathogenic Streptomyces | 0.00E+00 | 2.69E-04 | 1.05E-04 | 1.15E-04 | 0.00E+00 | 6.82E-04 | 1.55E-03 | 6.46E-04 | 1.28E-03 | 1.61E-04 | 0.0480% | 15.06% |
Pct in Bac: the percentage of a taxon in bacteria; Pct in Strep: the percentage of a taxon in the genus Streptomyces