Table 7. Species resolution using the Best Close Match method and the tree-based method with five barcodes and their combinations.
Sequences | Number | Best close match (%) | BI (%) | NJ (%) | ||||
---|---|---|---|---|---|---|---|---|
Correct | Ambiguous | Incorrect | No match | Threshold | ||||
ITS | 132 | 93.2 | 6.8 | 0.0 | 0.0 | 0.45 | 84.2 | 84.2 |
trnK | 125 | 36.0 | 61.6 | 2.4 | 0.0 | 0.91 | 15.8 | 15.8 |
matK | 125 | 16.8 | 83.2 | 0.0 | 0.0 | 0.56 | 10.5 | 10.5 |
psbA | 126 | 27.0 | 71.4 | 0.8 | 0.8 | 1.12 | 5.2 | 5.2 |
rbcL | 125 | 12.0 | 88.0 | 0.0 | 0.0 | 0.63 | 0.0 | 0.0 |
ITS+trnK | 125 | 98.4 | 0.0 | 1.6 | 0.0 | 0.53 | 79.0 | 84.2 |
ITS+matk | 125 | 96.0 | 3.2 | 0.8 | 0.0 | 0.36 | 79.0 | 84.2 |
ITS+psbA | 126 | 96.0 | 4.0 | 0.0 | 0.0 | 0.54 | 84.2 | 89.5 |
ITS+rbcL | 125 | 100.0 | 0.0 | 0.0 | 0.0 | 0.38 | 89.5 | 89.5 |
trnK+matK | 125 | 52.0 | 45.6 | 2.4 | 0.0 | 0.72 | 26.3 | 26.3 |
trnK+psbA | 125 | 52.0 | 44.8 | 3.2 | 0.0 | 0.99 | 21.1 | 21.1 |
trnK+rbcL | 125 | 37.6 | 60.8 | 1.6 | 0.0 | 0.77 | 15.8 | 15.8 |
matK+psbA | 125 | 49.6 | 48.8 | 1.6 | 0.0 | 0.77 | 21.1 | 15.8 |
matK+rbcL | 125 | 25.6 | 74.4 | 0.0 | 0.0 | 0.59 | 10.5 | 10.5 |
psbA+rbcL | 125 | 30.4 | 68.8 | 0.8 | 0.0 | 0.83 | 10.5 | 5.2 |
ITS+matK+psbA | 125 | 96.0 | 3.2 | 0.8 | 0.0 | 0.54 | 68.4 | 89.5 |
ITS+trnK+matK | 125 | 98.4 | 0.0 | 1.6 | 0.0 | 0.54 | 73.7 | 89.5 |
ITS+trnK+rbcL | 125 | 98.4 | 0.0 | 1.6 | 0.0 | 0.51 | 84.2 | 89.5 |
ITS+matK+rbcL | 125 | 99.2 | 0.0 | 0.8 | 0.0 | 0.39 | 79.0 | 89.5 |
ITS+rbcL+psbA | 125 | 100.0 | 0.0 | 0.0 | 0.0 | 0.57 | 79.0 | 94.7 |
ITS+trnK+psbA | 125 | 98.4 | 0.0 | 1.6 | 0.0 | 0.68 | 79.0 | 89.5 |
trnK+matK+rbcL | 125 | 52.0 | 45.6 | 2.4 | 0.0 | 0.69 | 26.3 | 26.3 |
trnK+matK+psbA | 125 | 63.2 | 35.2 | 1.6 | 0.0 | 0.82 | 26.3 | 26.3 |
matK+psbA+rbcL | 125 | 49.6 | 49.6 | 0.8 | 0.0 | 0.72 | 21.1 | 21.1 |
rbcL+trnK+psbA | 125 | 55.2 | 41.6 | 3.2 | 0.0 | 0.86 | 15.8 | 21.1 |
ITS+matK+psbA+rbcL | 125 | 99.2 | 0.0 | 0.8 | 0.0 | 0.57 | 68.4 | 84.2 |
ITS+matK+psbA+trnK | 125 | 98.4 | 0.0 | 1.6 | 0.0 | 0.64 | 73.7 | 84.2 |
ITS+matK+rbcL+trnK | 125 | 98.4 | 0.0 | 1.6 | 0.0 | 0.52 | 73.7 | 84.2 |
ITS+rbcL+trnK+psbA | 125 | 98.4 | 0.0 | 1.6 | 0.0 | 0.66 | 79.0 | 84.2 |
trnK+matK+psbA+rbcL | 125 | 63.2 | 35.2 | 1.6 | 0.0 | 0.77 | 26.3 | 26.3 |
ITS+trnK+matK+psbA+rbcL | 125 | 98.4 | 0.0 | 1.6 | 0.0 | 0.64 | 79.0 | 84.2 |