Table 1. Characteristics of S. bovis, S. haematobium (Egypt isolate) [15], S. mansoni [13] and S. japonicum [16] genome assemblies.
| S. bovis | S. haematobium | S. mansoni | S. japonicum | |
|---|---|---|---|---|
| Estimated genome size (Mb) | 388–392c | 385 | 381 | 403 |
| Number of protein coding genes | 11,631 | 11,140 | 11,774 | 12,657 |
| GC content (%) | 34.4 | 32.1 | 34.7 | 33.5 |
| Repeat rate (%) | 35.83 | 34.44 | 39.66 | 36.85 |
| Contig statistics | ||||
| Total base pairs (Mb) | 361.0 | 352.7 | 362.5 | 369.0 |
| Number of contigs | 20,949 | 59,154 | 9,520 | 95,338 |
| N50 length (kb) | 34.9 | 22.4 | 76.7 | 6.1 |
| Length largest contig (kb) | 423.3 | 180.9 | 459.9 | 92.5 |
| Mean contig size (kb) | 17.2 | 6.0 | 38.1 | 3.9 |
| Median contig size (kb) | 9.6 | 0.9 | 20.9 | 2.5 |
| Scaffold statistics | ||||
| Number of scaffolds | 4,780 | 29,834 | 885 | 25,048 |
| Assembly size (Mb)a | 373.7 | 375.9 | 364.5 | 397.7 |
| Assembly total base pairs (Mb)b | 361.0 | 352.7 | 362.5 | 369.0 |
| N50 length (kb) | 202.9 | 317.5 | 32,115.3 | 173.6 |
| Length largest scaffold (Mb) | 1.1 | 1.8 | 65.5 | 1.7 |
| Number > 1kb (% of assembly) | 4,780 (100%) | 7,462 (97.6%) | 884 (99.9%) | 25,029 (100%) |
| Number > 10kb (% of assembly) | 4,367 (99.3%) | 2,384 (94.5%) | 446 (99.4%) | 4,663 (87.0%) |
| Number > 100kb (% of assembly) | 1,045 (70.9%) | 958 (79.8%) | 158 (97.0%) | 795 (59.3% |
| Mean scaffold size (kb) | 78.2 | 12.6 | 411.9 | 15.9 |
| Median scaffold size (kb) | 27.7 | 0.43 | 10.4 | 2.1 |
aCombined length of all scaffolds in Mb;
bCombined length of all scaffolds without gaps (N’s) in Mb;
cEstimated by GenomeScope