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. 2019 Feb 4;9:60. doi: 10.1038/s41398-019-0414-9

Table 1a.

Technologies applied to the dense Swedish pedigree

Method Sample Technology and genetic variation assessed
Karyotyping N = 9 (7 BIP1, 2 SCZ) Standard Giemsa banding; large, “microscopic” structural variants
Pedigree linkage analysis N = 378 (152 BIP, SCZ, or SAD; 226 unaffected relatives) 472 short tandem repeat markers; regions shared IBD
SNP genotyping N = 418 (81 BIP1, 67 BIP2, 22 BIP-NOS, 18 SCZ, 29 SAD; 201 controls Illumina OmniExpress SNPs, CNVs
Whole exome sequencing N = 26 (12 BIP1, 13 BIP2, 1 SAD) Agilent SureSelect, Illumina HiSeq; exonic SNVs, indels
Whole genome sequencing N = 10 BIP1 Illumina X Ten; SNVs, indels, structural variants, trinucleotide repeats