Table 5.
Statistics of the de novo transcriptome assembly for each species using Trinity assembler.
| Species | A. gummiferum | S. longifolium | T.glauca-FAR | T.glauca-BDS | |
|---|---|---|---|---|---|
| Individual reference | Ag3 | Syl10 | Tg4 | V6 | |
| Counts of transcripts | Total number of trinity genes (unigene) | 84,919 | 64,716 | 76,982 | 53,527 |
| Total number of trinity transcripts | 117,839 | 89,780 | 108,823 | 74,684 | |
| Percent GC | 45.86 | 46.37 | 44.45 | 46.21 | |
| Stats based on all transcript contigs | Contig N50 | 1,378 | 1,406 | 1,396 | 1,315 |
| Median contig length (bp) | 501 | 530 | 547 | 525 | |
| Average contig length (bp) | 843.45 | 867.27 | 876.12 | 839.11 | |
| Total assembled bases | 99,391,026 | 77,863,296 | 95,341,718 | 62,667,790 | |
| Stats based on only LONGEST ISOFORM per ׳GENE׳ | Contig N50 | 1021 | 1219 | 1263 | 1199 |
| Median contig length (bp) | 386 | 402 | 421 | 415 | |
| Average contig length (bp) | 672.69 | 727.09 | 755.46 | 734.46 | |
| Total number of assembled bases | 57,124,398 | 47,054,345 | 58,156,816 | 39,313,402 |