Table 7.
Differentially expressed gene resulting from EdgeR.
| Reference for reads alignment | Species | Total number of genes | Differentially expressed genes (common dispersion) | over-expressed genes (LogFC≥1) | under-expressed genes (LogFC≤-1) | % of differentially expressed genes |
|---|---|---|---|---|---|---|
| E. grandis | A. gummiferum | 27,294 | 3463 | 2792 | 671 | 12.69 |
| S. longifolium | 26,626 | 2747 | 1.768 | 979 | 10.32 | |
| T. glauca-FAR | 23,622 | 413 | 234 | 179 | 1.75 | |
| T. galuca-BDS | 27,014 | 662 | 609 | 53 | 2.45 | |
| de novo transcriptome | A. gummiferum | 84,919 | 4751 | 2994 | 1757 | 5.59 |
| S. longifolium | 39,929 | 3379 | 2063 | 1316 | 8.46 | |
| T. glauca-FAR | 31,379 | 388 | 243 | 145 | 1.24 | |
| T. galuca-BDS | 36,047 | 493 | 400 | 93 | 1.37 |