Table 5. Quality control data and statistics from whole-exome sequencing.
| Sample ID | no. reads | mapped reads (%) | duplicates (%) | statistics of the analyzed region (Sure Select V5 All Exon Plus UTR, 15 bp added) |
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| >Q30 reads (%) | average insert size | insert size StdDev | average depth | >5x cov (%) | >10x cov (%) | >20x cov (%) | >40x cov (%) | ||||||||
| The sample ID of the technical replicates are marked with asterisk. | |||||||||||||||
| A438 | 138452577 | 99.92% | 5.26% | 92.01% | 190.8 | 67.7 | 119.9 | 99.60% | 99.20% | 97.60% | 90.60% | ||||
| B168 | 140611220 | 99.94% | 2.28% | 92.93% | 184.2 | 55.3 | 134.5 | 99.30% | 98.60% | 96.40% | 88.80% | ||||
| BI269* | 187542878 | 99.96% | 9.18% | 0.926137 | 157.93 | 45.71 | 168.597 | 99.10% | 98.40% | 96.40% | 90.50% | ||||
| BI370* | 138284674 | 99.96% | 8.02% | 0.925547 | 159.99 | 48.74 | 125.946 | 98.90% | 97.80% | 94.80% | 85.50% | ||||
| BI919* | 97057952 | 99.94% | 3.96% | 0.901908 | 183.16 | 63.17 | 88.512 | 99.10% | 97.70% | 93.30% | 78.00% | ||||
| BIB82 | 130560882 | 99.94% | 3.30% | 92.36% | 180.8 | 57.1 | 122.1 | 99.50% | 99.00% | 97.20% | 89.90% | ||||
| Br333 | 93171478 | 99.95% | 6.63% | 93.12% | 190.6 | 68.6 | 80.7 | 99.00% | 97.70% | 93.10% | 76.40% | ||||
| Br708 | 178033001 | 99.94% | 3.25% | 93.01% | 177.5 | 54.2 | 166.6 | 99.50% | 99.10% | 98.00% | 94.20% | ||||
| Br857 | 144136294 | 99.96% | 3.43% | 92.79% | 186.4 | 64.2 | 133.5 | 99.40% | 98.90% | 97.20% | 90.80% | ||||
| Br969 | 106686550 | 99.92% | 5.23% | 91.83% | 185.9 | 68.0 | 95.7 | 99.30% | 98.60% | 95.90% | 84.80% | ||||
| BrA206 | 80177041 | 99.96% | 3.44% | 93.32% | 185.3 | 62.6 | 72.9 | 98.80% | 97.20% | 91.40% | 71.70% | ||||
| Y166 | 76810758 | 99.96% | 4.51% | 93.30% | 174.9 | 52.4 | 69.8 | 99.10% | 97.60% | 91.80% | 71.30% | ||||
| Y292 | 95054488 | 99.81% | 2.32% | 92.12% | 180.9 | 57.4 | 88.5 | 99.20% | 98.10% | 94.30% | 80.00% | ||||
| Y316 | 87607856 | 99.95% | 9.49% | 92.09% | 174.1 | 56.7 | 74.9 | 99.20% | 98.20% | 93.90% | 76.60% | ||||
| Y331 | 96374496 | 99.82% | 7.61% | 90.97% | 179.4 | 57.5 | 85.0 | 99.30% | 98.40% | 94.80% | 80.30% | ||||
| Y375 | 99837105 | 99.93% | 7.35% | 91.82% | 181.6 | 63.8 | 86.9 | 99.40% | 98.60% | 95.60% | 82.20% | ||||
| Y393 | 126108409 | 99.94% | 6.30% | 93.40% | 189.4 | 59.8 | 110.9 | 99.60% | 99.00% | 97.00% | 88.10% | ||||
| Y421 | 100073380 | 99.93% | 5.74% | 92.01% | 186.1 | 58.5 | 89.2 | 99.20% | 98.30% | 94.80% | 81.10% | ||||
| Y426 | 165152957 | 99.94% | 24.86% | 90.08% | 175.2 | 60.6 | 113.5 | 99.60% | 99.20% | 97.90% | 91.50% | ||||
| Y440* | 120135303 | 99.78% | 13.84% | 0.900957 | 177.41 | 62.88 | 97.494 | 99.40% | 98.80% | 96.30% | 85.80% | ||||
| Y482 | 83982287 | 99.75% | 21.33% | 90.80% | 188.2 | 70.9 | 59.7 | 99.10% | 97.60% | 91.10% | 67.20% | ||||
| Y516 | 105766222 | 99.92% | 6.94% | 92.24% | 183.6 | 56.0 | 93.3 | 98.80% | 97.50% | 93.40% | 79.60% | ||||
| Y520 | 116261151 | 99.80% | 5.07% | 91.62% | 175.6 | 58.4 | 106.2 | 99.20% | 98.30% | 95.50% | 85.10% | ||||
| Y532 | 104607488 | 99.92% | 5.72% | 91.77% | 185.9 | 56.8 | 93.6 | 99.40% | 98.60% | 95.50% | 82.80% | ||||
| Y558 | 99200163 | 99.79% | 4.78% | 91.02% | 180.2 | 60.6 | 89.0 | 99.00% | 97.70% | 93.70% | 79.80% | ||||
| Y591 | 81128182 | 99.79% | 3.15% | 91.46% | 189.9 | 67.4 | 74.3 | 99.20% | 98.00% | 93.10% | 74.50% | ||||
| Y64 | 133401783 | 99.93% | 2.80% | 92.41% | 180.0 | 58.0 | 127.8 | 99.40% | 98.80% | 96.60% | 88.50% | ||||
| Y640 | 129387141 | 99.94% | 2.19% | 89.53% | 176.1 | 55.8 | 125.0 | 99.40% | 98.70% | 96.40% | 88.10% | ||||
| Y645 | 114470684 | 99.95% | 9.44% | 93.06% | 180.0 | 61.7 | 96.1 | 99.50% | 98.80% | 96.30% | 85.30% | ||||
| Y724 | 124302299 | 99.84% | 5.34% | 92.01% | 176.0 | 59.8 | 114.0 | 99.30% | 98.60% | 96.30% | 87.60% | ||||
| Y726 | 101306831 | 99.93% | 3.54% | 91.98% | 177.7 | 60.4 | 94.1 | 99.30% | 98.40% | 95.20% | 82.90% | ||||
| Y78 | 89614381 | 99.94% | 5.49% | 90.99% | 176.9 | 56.5 | 79.4 | 98.90% | 97.40% | 92.10% | 74.20% | ||||
| Y787 | 114795165 | 99.80% | 3.63% | 92.68% | 197.0 | 71.2 | 103.7 | 99.50% | 98.90% | 96.70% | 87.20% | ||||
| Y803 | 120331211 | 99.93% | 12.18% | 91.54% | 176.2 | 58.9 | 100.5 | 99.40% | 98.70% | 96.20% | 86.00% | ||||
| Y872 | 141008850 | 99.93% | 2.49% | 92.74% | 175.4 | 52.1 | 137.4 | 99.30% | 98.60% | 96.50% | 89.10% | ||||
| Y880 | 110514415 | 99.90% | 4.95% | 92.46% | 181.6 | 65.7 | 85.9 | 99.20% | 98.10% | 93.90% | 78.60% | ||||
| Y915 | 101630477 | 99.88% | 12.02% | 93.19% | 192.2 | 65.7 | 82.7 | 99.30% | 98.40% | 94.80% | 79.80% | ||||
| Y919 | 88647901 | 99.96% | 3.69% | 93.03% | 179.2 | 57.4 | 80.1 | 99.30% | 98.20% | 93.90% | 77.50% | ||||
| Y928 | 94852671 | 99.94% | 4.20% | 91.06% | 182.6 | 61.4 | 86.2 | 98.90% | 97.40% | 92.60% | 76.90% | ||||
| Y967 | 117471985 | 99.93% | 3.69% | 93.49% | 179.6 | 58.5 | 108.5 | 99.50% | 98.80% | 96.40% | 86.80% | ||||
| Y974 | 119874575 | 99.94% | 4.46% | 89.84% | 178.6 | 61.7 | 109.1 | 99.60% | 98.90% | 96.70% | 87.50% | ||||
| Y988 | 127546449 | 99.96% | 5.33% | 92.30% | 157.7 | 46.3 | 120.2 | 98.70% | 97.50% | 93.90% | 83.30% | ||||
| YA205 | 96160167 | 99.95% | 7.07% | 90.93% | 177.5 | 61.1 | 84.7 | 99.20% | 98.10% | 93.80% | 78.30% | ||||
| YA243 | 129654716 | 99.92% | 9.35% | 93.46% | 186.4 | 69.1 | 110.0 | 99.10% | 98.10% | 94.80% | 83.50% | ||||
| YA29 | 170816106 | 99.91% | 2.96% | 83.51% | 182.1 | 55.8 | 161.4 | 99.30% | 98.70% | 97.20% | 92.20% | ||||
| YA626 | 195722635 | 99.91% | 6.58% | 84.44% | 179.3 | 49.7 | 175.8 | 99.60% | 99.10% | 97.90% | 93.90% | ||||
| YA762* | 107955782 | 99.95% | 4.02% | 0.89896 | 168.69 | 49.99 | 101.205 | 99.20% | 98.30% | 95.30% | 84.20% | ||||
| YB330 | 106184066 | 99.94% | 4.54% | 91.56% | 178.1 | 51.5 | 98.6 | 99.00% | 98.00% | 94.70% | 82.90% | ||||
| YB479 | 105205966 | 99.94% | 2.95% | 90.97% | 181.0 | 56.4 | 98.6 | 99.40% | 98.50% | 95.30% | 83.10% | ||||