Table 2. Highly expressed genes in mammary epithelial cells with FPKM values >2000 at three different stages of lactation in Kashmiri and Jersey cattle1.
| Genes | Kashmiri | Jersey | ||||
|---|---|---|---|---|---|---|
| D15 | D90 | D250 | D15 | D90 | D250 | |
| CSN1S1 | 151,546 | 128,456.2 | 194,567.1 | 164,564.5 | 156,743.9 | 234,598.2 |
| CSN1S2 | 71,398.8 | 89,764.6 | 125,657 | 150,945 | 167,512.3 | 182,657.2 |
| CSN3 | 161,987.2 | 159,574.6 | 192,456.5 | 181,457.6 | 150,675.1 | 231,241.7 |
| CSN2 | 211,651.8 | 185,657.23 | 227,861.2 | 243,561.9 | 200,165 | 245,241.9 |
| LGB | 147,876.25 | 98,365.7 | 148,641.1 | 137,645.7 | 100,387 | 140,034.5 |
| LALBA | 34,224.31 | 37,937.7 | 52,945.3 | 41,669.1 | 40,597.8 | 45,782.2 |
| RPLP1 | 21,400.1 | 15,712.7 | 7,041 | 9,184.13 | 3,006.93 | 3,774.83 |
| RPS28 | 17,835.6 | 9,313.4 | 3,436.38 | 8,888.89 | - | - |
| RPS20/snoU54 | 14,922.6 | 6,510.56 | - | 8,756.15 | - | - |
| RPLPO | 11,925.8 | - | 3,133.07 | 5,337.15 | - | - |
| RPS12 | - | - | - | - | 3,089.68 | 2,494.05 |
| B2M | - | 7,468.17 | 2,723.17 | - | 10,721 | 14,357.5 |
| CCL14 | - | - | - | - | 7,509.43 | 10,501.5 |
1Mammary epithelia cells were isolated from milk obtained from Kashmiri (n = 3) and Jersey (n = 3) cows at D15 (15 days in milk) (early lactation), D90 (mid-lactation) and D250 (late-lactation) and subjected to RNA-sequencing.
‘-’Indicate that the genes have FPKM values less than the threshold values (See S3 Table for FPKM values of all genes).