TABLE 5.
Primers related to vRNA sequence determination
| Target | Primer name | Sequence (5′→3′) | Sequencing primer |
|---|---|---|---|
| 3′ end of segment 5 | 3′ Seq S5 2bp for | GAAAAATACCCTTGTTTCTACTAG | |
| 3′ Seq S5 rev | AGTTCTCTCATCCACTTTCCGT | x | |
| 3′ end of segment 7 | 3′ Seq S7 2bp for | GTAAAAAACTACCTTGTTTCTACTAG | |
| 3′ Seq S7 rev | TATGAGACCGATGCTGGGAG | x | |
| 3′ end of segment 7 (OP7 virus) | 3′ Seq S7-OP7 2bp for | GTAAAAAACTACCTTGTTTCTACTAG | |
| 3′ Seq S7-OP7 rev | GTCACAGTCCCCATCCTGTT | x | |
| 3′ end of segment 8 | 3′ Seq S8 2bp for | AAAAACACCCTTGTTTCTACTAG | |
| 3′ Seq S8 rev | TTTATCCATGATCGCCTGGT | x | |
| 5′ end of segment 5 | 5′ Seq S5 for | ACCAATCAACAGAGGGCATC | x |
| 5′ Seq S5 2bp rev | TGATTATCTACCCTGCTTTCGCTAG | ||
| 5′ end of segment 7 | 5′ Seq S7 for | TAGCTCCAGTGCTGGTCTGA | x |
| 5′ Seq S7 2bp rev | TTTCAATATCTACCTGCTTTCGCTAG | ||
| 5′ end of segment 7 (OP7 virus) | 5′ Seq S7-OP7 for | TCCAGTGCTGGTCTGAAAGA | x |
| 5′ Seq S7-OP7 2bp rev | TCAACATCTACCTGCTTTCACTAG | ||
| 5′ end of segment 8 | 5′ Seq S8 for | TCACCATTGCCTTCTCTTCC | x |
| 5′ Seq S8 2bp rev | TGTCACCCTGCTTTCGCTAG | ||