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MSE of regressing external baseline data on imputed gene means. Comparison of unaltered means, means from the Liu data, and MCDC data. Affymetrix and RNAseq baselines are both from external sources independent of the LINCS L1000 data.
| Method | Affymetrix Baseline | RNAseq Baseline |
|---|---|---|
| Unaltered | 1.91 | 1.66 |
| Liu | 1.87 | 1.58 |
| MCDC | 1.76 | 1.55 |
