Table 3.
Gene | Locus Novelty | Common/Rare Coding SNPs | Nearest Gene | CVD Tissues (S-PrediXcan) | Mouse Kidney Single Cell Clusters | Supplementary Drug Table Reference | Count/Drug | Aorta IPA |
---|---|---|---|---|---|---|---|---|
ADK | novel | rs34868542 | ADK | --↑x-xx | ST12 | 12 | PP;SBP | |
FDFT1e | novel | NA | NA | x-↑↑↑xx | ST11, ST12 | LOVASTATIN, LAPAQUISTAT ACETATE | - | |
PLAUe | novel | rs34868542 | ADK | ↑-xxxx- | ST11, ST12 | 55 | - | |
PSMB7 | novel | NA | NA | xx-x↑xx | ST12 | 5 | - | |
PSMB9 | novel | NA | NA | x--x↑x- | ST12, ST13 | 5 | - | |
RAB10 | novel | NA | NA | xx-xxx↑ | Immune | - | ||
RXFP2 | novel | rs9603376 | RXFP2 | xxxx-↑x | ST12 | 4 | - | |
ACHEb | known | rs374292503 | Intergenic | −x↓↓↓↓↓ | Tubules | ST12 | 56 | DBP |
ACP2e | known | rs11039216 | SLC39A13 | ↑↑xx-xx | ST11 | ATENOLOL, VERAPAMIL | - | |
AGERa | known | rs1061808 | AGPAT1 | x↑↑x↑-x | ST12 | VITAMIN B12 | DBP | |
ARL3 | known | rs140473396 | CNNM2 | ↑↑↑↑↑xx | ST12 | CHEMBL384759 | - | |
ARVCF | known | rs2240716 | ARVCF | xx↓x↓xx | ST12, ST13 | 3 | PP | |
AS3MT | known | rs140473396 | CNNM2 | --↑↑↑x- | ST12 | LK-204545 | - | |
ATP1B1f | known | rs4656180 | NME7 | xx↑x-x- | ST12 | 4 | - | |
BACE1e | known | rs573455 | CEP164 | xxxx-↑x | ST11, ST12 | 28 | - | |
BAG6 | known | rs1800629 | TNF | --↑↑↑xx | ST13 | CARBAMAZEPINE | - | |
BCAR1e | known | rs12449170 | CFDP1 | −x↑x↑x- | ST11 | CELECOXIB | SBP | |
C4Ab | known | rs1061808 | AGPAT1 | ↓↓↓↓↓↓x | ST12 | IMMUNE GLOBULIN | DBP | |
CDC16 | known | rs11617448 | CDC16 | ↑↑↑↑↑↑↑ | Tubules | - | ||
CDC25A | known | rs35979968 | MAP4 | ↓↓↓↓↓-↓ | Tubules | SBP | ||
CEP68 | known | rs74181299 | CEP68 | ↑↑↑-↑-↑ | Tubules | PP | ||
CLCN6e | known | rs6669371 | CLCN6 | xx-x↓-↓ | Tubules | ST11, ST13, ST14 | 9 | - |
COL21A1c | known | rs12203179/ rs115079907, rs200999181, rs2764043 | COL21A1 | xxx-↓x↓ | - | |||
CYP21A2a | known | rs1061808 | AGPAT1 | xx↑x↑xx | ST13 | KETOCONAZOLE | - | |
FES | known | rs2071382 | FES | −x↓↓↓-↓ | Immune | ST13 | NAPROXEN | SBP |
FURIN | known | rs2071382 | FES | xx↑xxxx | ST12 | 3 | SBP | |
GFAPe | known | rs6503413 | NMT1 | xx↓xxx- | ST11, ST13, ST14 | 28 | - | |
GUCY1A3e | known | rs3796592 | GUCY1A3 | xx↓xxx↓ | ST11, ST14 | 6 | SBP | |
GUCY1B3e | known | rs3796592 | GUCY1A3 | xx↓xx-x | ST11, ST14 | 6 | SBP | |
HLA-Bg | known | rs1800629 | TNF | ---↑--x | ST12, ST13 | 6 | - | |
HLA-DRB5b | known | rs1061808 | AGPAT1 | --↓↓↓-x | ST12 | 1D09C3 | - | |
IGFBP3e | known | rs10260816 | Intergenic | x↑-xxxx | ST11, ST14 | FLUOROURACIL, CELECOXIB | - | |
MADDe | known | rs11039216 | SLC39A13 | ↑↑-x--x | ST11 | VERAPAMIL | - | |
NME6 | known | rs35979968 | MAP4 | x--x↑↑↑ | Glomerulus | - | ||
NMT1 | known | rs6503413 | NMT1 | --↑↑↑-↑ | Immune | ST12 | CHEMBL355497 | SBP |
NOTCH4b | known | rs1061808/ rs139341533 | AGPAT1 | x↓↓x↓↓x | ST12 | NIROGACESTAT, REGN-421 | DBP | |
NOV | known | rs11783703 | NOV | x↓↑x↑xx | ST12 | INSULIN | DBP | |
NPPBef | known | rs6669371 | CLCN6 | x↓xxxxx | ST11, ST14 | OXYMETHOLONE, CARVEDILOL | - | |
NPR3e | known | rs12656497 | NPR3 | xxxxx↑x | ST11, ST12, ST13 | 4 | - | |
NSF | known | rs80335285 | GOSR2 | ↑↑-↑-xx | ST12 | BITOSCANATE | - | |
NT5C2 | known | rs140473396 | CNNM2 | xx↑x↑↓x | ST12 | 4 | SBP | |
OPRL1 | known | rs6090040 | TCEA2 | ↓x↓x↓↓x | ST12 | 13 | - | |
PDE3A | known | rs60691990/ rs141325069 | Intergenic | xxx-xx- | ST12, ST13 | 19 | - | |
PKN2 | known | rs12035750 | GTF2B | x-xxxx↑ | Tubules | ST12 | 3 | - |
POC1B | known | rs11105354 | ATP2B1 | x--x-x↑ | Tubules | - | ||
PRKAR2Bd | known | rs12705390 | AF086203 | x-↑x--x | ST12 | 5 | ALL | |
SBF2e | known | rs58068637 | SWAP70 | xx↓xxxx | ST11 | PAROXETINE | - | |
SFXN2 | known | rs140473396 | CNNM2 | −↑x-xx↑ | Tubules | - | ||
SLC12A2e | known | rs6595838 | FBN2 | x↑xx-xx | ST11, ST12 | 6 | - | |
SLC4A7 | known | rs2643826 | SLC4A7 | xx↓xxx↓ | Immune | SBP | ||
SRR | known | rs12952051 | SMG6 | ↑↑-↑↑↑↑ | Tubules | ST12 | PYRIDOXAL PHOSPHATE, SERINE | - |
THBS2a | known | rs533414974 | Intergenic | xx↑-↑xx | ST12 | BEVACIZUMAB, CORTICOTROPIN | DBP | |
TUBB1 | known | rs6026739 | ZNF831 | xxxxxx↑ | ST12, ST13 | 10 | - |
Selection criteria: evidence from at least 2 categories (coding variant gene, S-PrediXcan gene, gene implicated in mouse kidney single-cell expression, or drug target) and from at least 4 analyses. Gene = Gene showed enriched expression in one or more cell type in murine kidney single-cell RNA sequencing experiment, or was significant in genetically predicted gene expression analysis for any of the 45 tissues; Novel = Indicator variable denotes whether variants in a given gene region have previously been reported in genome-wide association studies of blood pressure traits. Sentinel SNPs = Sentinel SNP from common or rare variant analyses from each independent locus. Nearest Gene = Column reports genes that would have been identified if the nearest gene annotation strategy was used to link GWAS significant variants. CVD Tissues = Column identifies genes that were significantly associated with genetically predicted gene expression and blood pressure traits (using S-PrediXcan) in the following cardiovascular related tissues: heart atrial appendage, heart left ventricle, aorta, coronary artery, tibial artery, adrenal gland and kidney. Up (down) arrow indicates a positive (negative) association between GPGE and at least one blood pressure trait. Dash indicates data was not significant and x indicates data were unavailable. For a full-set of tissue specific results, see Supplementary Tables 8a–8c. Mouse kidney single-cell clusters = Column highlights the cell-type in which specific genes were enriched in murine single-cell RNA sequencing expression analyses. Supplementary Drug Table Reference = References the supplementary tables containing the gene-drug relationship. Count/Drug = Column summarizes drugs targeting genes when the number of drugs is ≤2 or the total number of drugs targeting the gene when the number of drugs is >2 which were identified to interrelate with the gene from the following databases: Guide to Pharmacology Interactions, Drugbank, PharmGKB, TDG Clinical Trials, TEND, and/or ChEMBL Interactions. Aorta IPA = Trait(s) for which the gene was identified in the aorta IPA network, SBP = systolic blood pressure; DBP = diastolic blood pressure; PP = pulse pressure;
Genetically predicted expression of these genes was positively associated with pulse pressure, inversely associated with DBP, and non-significant for SBP
Genetically predicted expression of these genes was positively associated with DBP, inversely associated with pulse pressure, and non-significant for SBP
Genetically predicted expression of these genes was positively associated with DBP and inversely associated with SBP and pulse pressure
Genetically predicted expression of these genes was positively associated with SBP and pulse pressure and inversely associated with DBP
Targeted by an antihypertensive medication
Mendelian gene for hypertension
Mendelian gene for hypotension