Table 2.
Summary of significant selected regions identified using hapFLK analyses per group.
| Chr | Starts (Mb) | End (Mb) | Size (Mb) | SNPa | Population selectedb | N genesc | Causal variantsd | Genes associated with causal variantse | Overlapsf |
|---|---|---|---|---|---|---|---|---|---|
| 2 | 119.2 | 119.8 | 0.64 | 101 | Meat; Brazil | 2 | 5 | CWC22, ZNF385B | Meat50 |
| 3 | 24.1 | 37.8 | 13.73 | 351 | Meat | 124 | 5 | LOC106501971, MRPL37, OSBPL9 | Barki (Hot and arid)29; Meat(Boer)50 |
| 7 | 60.6 | 62.7 | 2.12 | 132 | Meat; Brazil | 23 | 7 | SPOCK1, MYOT, TRPC7, LOC106502333 | |
| 10 | 34.2 | 35.7 | 1.48 | 110 | Brazil | 14 | 8 | PSMA3, CCDC198, C10H14orf37 | Milk50 |
| 23 | 45.1 | 48.8 | 4.18 | 125 | Angora | 15 | 5 | DST, KHDRBS2 | Wild5 |
Chr: Chromosome; Start, End: beginning and end of the genome window analyzed considering a window of 2 Mb for each side from the last significant SNP. aNumber of SNP in the region; bPopulation that have received selection pressure in the region based on the tree and cluster plot analyses; cNumber of genes founded in each region; dNumber of SNPs in the region identified as causal variants using CAVIAR software; eGenes associated with at least one SNP causal variant (distant at maximum 500 kb of the SNP). fOverlaps with previous studies (showed by numbers in reference section) of selection signature in goats (showed the name of the population or trait).