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. 2019 Feb 6;9:1506. doi: 10.1038/s41598-018-37815-w

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Haplotype clustering and correlation with soybean cyst nematode female index of the cytosolic-localized GmSHMT08c in the 106 soybean lines. The 106 soybean lines included non-domesticated; semi-domesticated, and elite domesticated introductions belonging to the USDA soybean collection. Schematic graph shows the position of SNP/indel for Glyma.08g108900 (GmSHMT08c) gene. SNP in black background were specific to Peking-type of resistance, and clustered with soybean lines carrying resistance to three SCN Hg-types; 0, 2.7, and 2.5.7. Blue box represents exon, blue bar represents intron, orange box represents promoter region, and grey box represents 3′ or 5′ UTR. SNPs were positioned relative to the genomic position in W82. SNP position in red text showing non-synonymous SNPs leading to amino acid change. Female Index in blue (FI < 10, resistant to SCN), in green (10 < FI < 30, Moderate resistance), in orange (30 < FI < 60, Moderate susceptibility), in white (60 < FI, Susceptible to SCN).