Table 5.
Trait | Dependent variable | Polygenic effect | FDRa | Bonferronib | λ |
---|---|---|---|---|---|
BW0 | mDRP | 26 | 6 | 1.12 | |
0 | 0 | 0.99 | |||
LOCO + CHR_PC20 | 0 | 0 | 0.64 | ||
LOCO + CHR_PC3 | 3 | 0 | 1.00 | ||
BW23 | mDRP | 0 | 0 | 1.04 | |
0 | 0 | 0.99 | |||
LOCO + CHR_PC20 | 0 | 0 | 0.59 | ||
LOCO + CHR_PC3 | 0 | 0 | 0.91 | ||
BW1314 | mDRP | 0 | 0 | 1.08 | |
0 | 0 | 1.00 | |||
LOCO + CHR_PC20 | 0 | 0 | 0.56 | ||
LOCO + CHR_PC3 | 0 | 0 | 0.91 |
FDR: false discovery rate; Bonferroni: Bonferroni correction; λ: inflation factor; BW0: body weight recorded at birth; BW23: body weight recorded at 2 to 3 months of age; BW1314: body weight recorded at 13 to 14 months of age; dDRP: de-regressed proofs for the direct genetic effect; mDRP: de-regressed proofs for the maternal genetic effect
aNumber of significant SNPs according to false discovery rate
bNumber of significant SNPs according to Bonferroni-correction