Table 3. Significant markers associated with a resistant reaction to SCN HG type 0 in the Andean subpopulation of the common bean core collection.
| SNP | Chr* | Major Allele | Minor Allele | MAF** | -Log10(p) | R2 |
|---|---|---|---|---|---|---|
| sc00022ln1003704_109623_C_T_32611495 | 1 | T | C | 0.27 | 3.46 | 0.11 |
| sc00265ln348200_251662_T_C_165499786 | 2 | C | T | 0.46 | 3.66 | 0.12 |
| sc00394ln266395_223173_T_C_204976825 | 7 | C | T | 0.13 | 3.06 | 0.08 |
| sc00615ln187153_14670_A_G_254141142 | 8 | G | A | 0.24 | 3.56 | 0.10 |
| sc00874ln135217_24012_A_G_294993727 | 8 | G | A | 0.23 | 3.56 | 0.09 |
| sc00615ln187153_48449_C_A_254174921 | 8 | A | C | 0.23 | 3.56 | 0.09 |
| sc00915ln129006_11903_A_C_300404206 | 8 | C | A | 0.22 | 3.48 | 0.09 |
| sc00091ln623366_105511_A_G_85246735 | 8 | G | A | 0.15 | 3.37 | 0.09 |
| sc03015ln25795_24227_A_G_424454518 | 8 | G | A | 0.20 | 3.18 | 0.08 |
| sc00303ln322736_322161_G_A_178330165 | 8 | A | G | 0.20 | 3.13 | 0.08 |
| sc01886ln53823_3577_A_G_381672594 | 8 | G | A | 0.20 | 3.13 | 0.08 |
| sc00977ln121615_117414_C_A_308244782 | 8 | A | C | 0.23 | 3.04 | 0.10 |
| sc01150ln100434_26250_T_G_327275921 | 8 | G | T | 0.23 | 3.04 | 0.10 |
| sc00074ln679062_300164_A_G_74264487 | 9 | G | A | 0.30 | 3.26 | 0.09 |
| sc00011ln1496550_816617_T_G_19385932 | 9 | G | T | 0.26 | 3.19 | 0.08 |
| sc00011ln1496550_257154_A_G_18826469 | 9 | G | A | 0.26 | 3.14 | 0.08 |
| sc00011ln1496550_1068436_G_A_19637751 | 9 | A | G | 0.13 | 3.05 | 0.08 |
| sc01428ln78433_61756_G_A_352114770 | 11 | A | G | 0.39 | 4.10 | 0.11 |
| sc04083ln13522_9316_G_A_444539981 | 11 | A | G | 0.18 | 3.51 | 0.10 |
| sc00331ln303842_149404_C_A_186938278 | 11 | A | C | 0.42 | 3.40 | 0.09 |
| sc00331ln303842_263624_C_A_187052498 | 11 | A | C | 0.40 | 3.28 | 0.09 |
| sc00331ln303842_45835_T_G_186834709 | 11 | G | T | 0.40 | 3.28 | 0.09 |
| sc01867ln54851_44400_C_T_380677834 | 11 | T | C | 0.40 | 3.28 | 0.09 |
*Chromosome
**Marker allele frequency