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. 2018 Dec 21;211(2):483–494. doi: 10.1534/genetics.118.301394

Table 1. Genomic inflation factors (λ) under the null hypothesis of no interaction for six interaction tests with normally distributed and highly correlated exposures.

Independent G-E Dependent G-E
SNP (N) SNP (N)
10 100 300 10 100 300
Linear regression
 Rare SNPa Omnibus 1.01 1.02 0.92 0.99 0.97 1.03
MultiE-uGRS 0.99 0.96 0.98 1.05 1.02 1.01
MultiE-wGRS 0.96 0.96 0.96 0.93 0.94 0.95
MultiSNP-ERS 1.00 1.00 1.01 1.03 1.00 1.02
uGRS-ERS 1.01 1.01 1.02 1.01 0.99 1.02
wGRS-ERS 0.96 0.98 0.99 1.00 0.98 1.04
 Common SNPb Omnibus 0.99 0.99 0.99 1.03 1.02 1.02
MultiE-uGRS 0.99 0.98 1.05 1.01 0.99 1.05
MultiE-wGRS 1.01 0.98 1.02 0.98 1.00 1.01
MultiSNP-ERS 1.01 1.05 1.00 0.99 1.00 0.99
uGRS-ERS 0.97 1.01 1.00 1.01 1.01 1.01
wGRS-ERS 0.99 1.01 0.99 1.02 0.98 0.98
Logistic regression
 Rare SNPa Omnibus 1.09 1.60 3.49c 1.13 1.65 3.63c
MultiE-uGRS 1.02 1.01 1.04 1.00 1.02 1.05
MultiE-wGRS 1.02 1.00 0.98 0.94 0.93 0.98
MultiSNP-ERS 1.05 1.20 1.58 1.05 1.17 1.57
uGRS-ERS 0.99 1.00 0.98 1.01 0.98 1.01
wGRS-ERS 1.03 0.98 0.99 1.02 0.96 1.01
 Common SNPb Omnibus 1.03 1.32 2.74c 1.02 1.31 2.81c
MultiE-uGRS 0.98 1.01 0.98 0.98 1.05 0.96
MultiE-wGRS 0.99 0.99 0.99 0.96 1.00 1.02
MultiSNP-ERS 0.86 1.04 1.40 0.98 1.07 1.41
uGRS-ERS 0.98 1.04 0.99 1.01 0.97 0.98
wGRS-ERS 0.99 1.01. 1.01 0.96 0.98 1.06
a

Rare SNP: RAF = [0.1–1% or 99–99.9%].

b

Common SNP: RAF = [1–99%].

c

5000 replicates.