Table 1. Genomic inflation factors under the null hypothesis of no interaction for six interaction tests with normally distributed and highly correlated exposures.
Independent G-E | Dependent G-E | ||||||
---|---|---|---|---|---|---|---|
SNP (N) | SNP (N) | ||||||
10 | 100 | 300 | 10 | 100 | 300 | ||
Linear regression | |||||||
Rare SNPa | Omnibus | 1.01 | 1.02 | 0.92 | 0.99 | 0.97 | 1.03 |
MultiE-uGRS | 0.99 | 0.96 | 0.98 | 1.05 | 1.02 | 1.01 | |
MultiE-wGRS | 0.96 | 0.96 | 0.96 | 0.93 | 0.94 | 0.95 | |
MultiSNP-ERS | 1.00 | 1.00 | 1.01 | 1.03 | 1.00 | 1.02 | |
uGRS-ERS | 1.01 | 1.01 | 1.02 | 1.01 | 0.99 | 1.02 | |
wGRS-ERS | 0.96 | 0.98 | 0.99 | 1.00 | 0.98 | 1.04 | |
Common SNPb | Omnibus | 0.99 | 0.99 | 0.99 | 1.03 | 1.02 | 1.02 |
MultiE-uGRS | 0.99 | 0.98 | 1.05 | 1.01 | 0.99 | 1.05 | |
MultiE-wGRS | 1.01 | 0.98 | 1.02 | 0.98 | 1.00 | 1.01 | |
MultiSNP-ERS | 1.01 | 1.05 | 1.00 | 0.99 | 1.00 | 0.99 | |
uGRS-ERS | 0.97 | 1.01 | 1.00 | 1.01 | 1.01 | 1.01 | |
wGRS-ERS | 0.99 | 1.01 | 0.99 | 1.02 | 0.98 | 0.98 | |
Logistic regression | |||||||
Rare SNPa | Omnibus | 1.09 | 1.60 | 3.49c | 1.13 | 1.65 | 3.63c |
MultiE-uGRS | 1.02 | 1.01 | 1.04 | 1.00 | 1.02 | 1.05 | |
MultiE-wGRS | 1.02 | 1.00 | 0.98 | 0.94 | 0.93 | 0.98 | |
MultiSNP-ERS | 1.05 | 1.20 | 1.58 | 1.05 | 1.17 | 1.57 | |
uGRS-ERS | 0.99 | 1.00 | 0.98 | 1.01 | 0.98 | 1.01 | |
wGRS-ERS | 1.03 | 0.98 | 0.99 | 1.02 | 0.96 | 1.01 | |
Common SNPb | Omnibus | 1.03 | 1.32 | 2.74c | 1.02 | 1.31 | 2.81c |
MultiE-uGRS | 0.98 | 1.01 | 0.98 | 0.98 | 1.05 | 0.96 | |
MultiE-wGRS | 0.99 | 0.99 | 0.99 | 0.96 | 1.00 | 1.02 | |
MultiSNP-ERS | 0.86 | 1.04 | 1.40 | 0.98 | 1.07 | 1.41 | |
uGRS-ERS | 0.98 | 1.04 | 0.99 | 1.01 | 0.97 | 0.98 | |
wGRS-ERS | 0.99 | 1.01. | 1.01 | 0.96 | 0.98 | 1.06 |
Rare SNP: RAF = [0.1–1% or 99–99.9%].
Common SNP: RAF = [1–99%].
5000 replicates.