Table 1.
Frequency distribution of the 20 most frequent EST-SSR repeat motifs in Phyllostachys violascens.
| Repeats |
Number of repeats of the motif |
|||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. | motif | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 46 | Total | Frequency |
| 1 | A/T | – | – | – | – | – | 4314 | 1499 | 767 | 395 | 277 | 160 | 97 | 81 | 96 | 110 | 122 | 61 | 33 | 13 | 2 | 8027 | 43.73% | |
| 2 | AG/CT | – | 877 | 551 | 531 | 557 | 343 | 62 | 3 | – | – | – | – | – | – | – | – | – | – | – | – | 1 | 2925 | 15.93% |
| 3 | CCG/CGG | 1177 | 376 | 91 | 3 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 1647 | 8.97% |
| 4 | C/G | – | – | – | – | – | 148 | 135 | 99 | 84 | 77 | 71 | 61 | 72 | 77 | 101 | 71 | 52 | 15 | 7 | 2 | 1072 | 5.84% | |
| 5 | AC/GT | – | 360 | 188 | 140 | 102 | 105 | 33 | 1 | – | – | – | – | – | – | – | – | – | – | – | – | – | 929 | 5.06% |
| 6 | AGG/CCT | 502 | 182 | 60 | 3 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 747 | 4.07% |
| 7 | AGC/CTG | 441 | 136 | 53 | 3 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 633 | 3.45% |
| 8 | AAG/CTT | 230 | 87 | 50 | 3 | – | – | – | 1 | – | – | – | – | – | – | – | – | – | – | – | – | – | 371 | 2.02% |
| 9 | AT/AT | – | 199 | 77 | 28 | 20 | 17 | 19 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 360 | 1.96% |
| 10 | ACC/GGT | 221 | 73 | 28 | 1 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 323 | 1.76% |
| 11 | AAC/GTT | 187 | 58 | 13 | 2 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 260 | 1.42% |
| 12 | CG/CG | – | 171 | 50 | 10 | 3 | 1 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 235 | 1.28% |
| 13 | ACG/CGT | 160 | 44 | 18 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 222 | 1.21% |
| 14 | ATC/ATG | 97 | 24 | 8 | 2 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 131 | 0.71% |
| 15 | AAT/ATT | 61 | 30 | 17 | 2 | – | – | – | – | – | – | 1 | – | – | – | – | – | – | – | – | – | – | 111 | 0.60% |
| 16 | ACT/AGT | 55 | 13 | 7 | 1 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 76 | 0.41% |
| 17 | AAAG/CTTT | 33 | 1 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 34 | 0.19% |
| 18 | ATCC/ATGG | 25 | 1 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 26 | 0.14% |
| 19 | AGGG/CCCT | 19 | 3 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 22 | 0.12% |
| 20 | AAGG/CCTT | 12 | 3 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 15 | 0.08% |
| Other | 155 | 27 | 1 | 1 | 2 | 2 | 2 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | 190 | 1.04% | |
| Total | 3375 | 2665 | 1212 | 730 | 684 | 616 | 251 | 104 | 84 | 77 | 72 | 61 | 72 | 77 | 101 | 71 | 52 | 15 | 7 | 2 | 1 | 18356 | 100.00% | |