Table 2.
Top 10 upregulated and top 9 downregulated lncRNAs.
| Gene ID | Chromosome | Base mean | L2FC* | p.BH# |
|---|---|---|---|---|
| XLOC_000633 | 1 | 613.81 | 4.68 | 1.57E-12 |
| XLOC_014744 | 19 | 86.99 | 3.27 | 3.80E-07 |
| XLOC_025859 | 3 | 37.60 | 3.15 | 6.31E-05 |
| XLOC_007088 | 14 | 94.29 | 2.72 | 1.45E-02 |
| XLOC_021786 | 26 | 63.96 | 1.96 | 2.26E-03 |
| XLOC_026730 | 4 | 472.66 | 1.89 | 4.70E-03 |
| XLOC_007668 § | 14 | 309.43 | 1.76 | 4.86E-03 |
| XLOC_033995 | 9 | 604.78 | 1.70 | 1.90E-02 |
| XLOC_001362 | 1 | 2492.84 | 1.64 | 2.00E-02 |
| XLOC_018958 | 23 | 265.57 | 1.56 | 1.24E-04 |
| XLOC_005117 | 12 | 607.08 | −2.24 | 2.26E-02 |
| XLOC_012297 | 18 | 42.87 | −1.83 | 8.13E-03 |
| XLOC_012298 | 18 | 34.84 | −1.77 | 7.81E-03 |
| XLOC_031319 | 7 | 239.91 | −1.60 | 1.20E-02 |
| XLOC_031318 | 7 | 141.73 | −1.56 | 1.52E-02 |
| XLOC_004943 | 12 | 574.63 | −1.35 | 1.40E-03 |
| XLOC_028334 | 5 | 1178.68 | −1.02 | 4.24E-05 |
| XLOC_010002 | 16 | 399.07 | −0.85 | 4.00E-02 |
| XLOC_031072 | 7 | 486.79 | −0.81 | 4.43E-02 |
*L2FC denotes the log2 fold-change. #p.BH denotes the p-value corrected for multiple testing using Benjamini-Hochberg method. §The region XLOC_007668 assembled by Cuffmerge contained both lncRNA and mRNA DCSTAMP loci. Therefore, here for we provide L2FC and p.BH estimates for region encompassed by the lncRNA transcripts within the XLOC_007668 region.