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. 2019 Feb 7;10:627. doi: 10.1038/s41467-019-08543-0

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — miR2275-triggered 24-nt reproductive phasiRNAs are abundant in litchi. a Stem–loop regions of two MIR2275 precursors in litchi. miR2275 and miR2275* sequences are marked in red and orange, respectively. Bulges within the miR2275/miR2275* duplexes are indicated by a cyan circle. b Alignment of all expressed members of the miR2275 family in litchi. The degree of conservation for each nucleotide is represented by the color, with a dark color denoting a high level of conservation and a light color denoting a low level. The consensus sequence of the alignment is displayed below with sequence logos. c Expression of miR2275 members in four litchi tissues. d Above: alignment of miR2275 duplex and its target sites in 24-PHAS loci in litchi. The nucleotide pairing at each position between miR2275 and miR2275* is indicated by different colors, with A:U/C:G matches denoted in green, G:U matches in purple, and all mismatches in pink. Below: nucleotide sequence alignment of 24-PHAS loci with sequence similarity denoted by the density of blue color, demonstrating no conservation outside of the miR2275 target site (as in grass 24-PHAS loci). e Accumulation of 24-nt phasiRNAs in different tissues of litchi, with each row denoting a 24-PHAS locus, and each column a tissue as indicated. The key at right indicates the abundance in units of log2(RPTM)