Table 2.

Repeat and Tranposable Element Content

% Total Repeat Content	714.70	31671	31975	567.84	824.70	8044
RepeatMasker	1.85%	2.18%	2.22%	2.66%	2.35%	2.66%
Repeat Scout	3.54%	4.07%	4.55%	6.67%	5.34%	6.67%
NUCmer	4.61%	4.65%	5.18%	8.45%	7.34%	8.45%
Combined nonredundant	6.17%	6.24%	6.76%	10.16%	9.03%	10.16%
# Transposable Elements	714.70	31671	31975	567	824	8044
RNA Transposons
SINE	0	0	0	0	0	0
LINE	32	48	73	140	140	110
LTR	83	73	67	94	94	92
Ty1/Copia	27	28	24	51	50	49
Gypsy	56	45	43	43	44	43
DIRS	21	38	45	10	9	16
DNA Transposons
TIR	48	48	65	123	91	185
hAT	5	12	38	83	56	128
Tc1-IS630-Pogo	13	10	8	9	9	26
PiggyBac	11	1	0	2	2	2
Tourist/Harbinger	0	1	1	1	1	1