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. Author manuscript; available in PMC: 2020 Jan 23.
Published in final edited form as: Cell Syst. 2019 Jan 16;8(1):27–42.e6. doi: 10.1016/j.cels.2018.12.001

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Software and Algorithms
ShapeMF https://github.com/h-samee/shape-motif N/A
bwtool https://github.com/CRG-Barcelona/bwtool/wiki N/A
Original source of public datasets
GBShape http://rohsdb.cmb.usc.edu/GBshape/ N/A
ENCODE http://genome.ucsc.edu/ENCODE/downloads.html N/A
HT-SELEX https://www.ebi.ac.uk/ena PRJEB14744, PRJEB3289
BioGRID https://thebiogrid.org/ N/A
MITOMI data http://lbnc.epfl.ch/data.html N/A