Table 1.

Number of sequenced reads and their alignment to the human genome (hg19).

	Control	Meth	Tat	Meth + Tat	Pooled Input
Total number of reads	35,582,719	36,449,122	23,742,921	40,019,315	35,838,803
Total number of alignments	32,594,991	34,255,959	21,211,764	36,906,854	34,240,934
Unique alignments (-q 25)	27,536,469	28,943,392	17,774,903	31,197,538	28,385,207
Unique alignments (without duplicate reads)	22,337,553	24,631,143	15,956,453	27,319,946	25,642,285
Normalized	15,956,453	15,956,453	15,956,453	15,956,453	15,956,453