Table 2.
TATA box promoter element matrices obtained from THP1 cells stimulated with Tat or with Meth+Tat.
| Reverse Consensus | A | C | G | T | Complement Consensus | A | C | G | T |
|---|---|---|---|---|---|---|---|---|---|
| (A) Tat stimulation | |||||||||
| T | 4 | 9 | 2 | 29 | N | 15 | 10 | 15 | 4 |
| T | 3 | 11 | 1 | 29 | G | 8 | 6 | 27 | 3 |
| T | 11 | 2 | 1 | 30 | N | 8 | 7 | 21 | 8 |
| T | 2 | 4 | 0 | 38 | N | 6 | 13 | 18 | 7 |
| A | 25 | 8 | 0 | 11 | T | 5 | 4 | 11 | 24 |
| T | 1 | 5 | 0 | 38 | A | 38 | 0 | 5 | 1 |
| A | 24 | 11 | 4 | 5 | T | 11 | 0 | 8 | 25 |
| N | 7 | 18 | 13 | 6 | A | 38 | 0 | 4 | 2 |
| N | 8 | 21 | 7 | 8 | A | 30 | 1 | 2 | 11 |
| C | 3 | 27 | 6 | 8 | A | 29 | 1 | 11 | 3 |
| N | 4 | 15 | 10 | 15 | A | 29 | 2 | 9 | 4 |
| (B) Meth+Tat stimulation | |||||||||
| T | 1 | 1 | 1 | 20 | N | 5 | 5 | 8 | 2 |
| T | 0 | 0 | 0 | 20 | T | 3 | 2 | 3 | 12 |
| T | 0 | 0 | 0 | 20 | A | 18 | 0 | 0 | 2 |
| A | 15 | 2 | 1 | 2 | T | 2 | 1 | 2 | 15 |
| T | 2 | 0 | 0 | 18 | A | 20 | 0 | 0 | 0 |
| A | 12 | 3 | 2 | 3 | A | 20 | 0 | 0 | 0 |
| N | 2 | 8 | 5 | 5 | A | 17 | 1 | 1 | 1 |
The frequency of nucleotides matching the TATA box promoter element was calculated on complementary and reverse genomic sequences, using TRANSFAC.