Table 3. Ordered list of biomass reactions chosen as objectives for multi-level linear optimization in FBA for the different species considered in this study.
| Species | Abbreviation | Biomass reaction name | Objective |
|---|---|---|---|
| Bacteroides thetaiotaomicron | BT | BTBiomass_BT_v2 | c1 |
| Faecalibacterium prausnitzii | FP | FPBiomass_FP | c2 |
| Escherichia coli K-12 MG1655 | EC | ECEC_BIOMASS_IAF1260_WT_59P81M | c3 |
| Lactobacillus plantarum | LP | LPbiomass_LPL60 | c4 |
| Lactococcus lactis | LL | LLbiomass_LLA | c5 |
| Streptococcus thermophilus | ST | STbiomass_STR | c6 |
| Helicobacter pylori | HP | HPBiomassHP_published | c7 |
| Klebsiella pneumoniae | KP | KPBiomass | c8 |
| Salmonella typhimurium | STy | STybiomass_iRR1083 | c9 |
| Escherichia coli O157:H7 (Sakai) | ECs | ECsEC_BIOMASS_IAF1260_WT_59P81M | c10 |
| Escherichia coli O157:H7 (EDL933) | ECe | ECeEC_BIOMASS_IAF1260_WT_59P81M | c11 |
| Homo sapiens Recon 2 | HS | HSbiomass_reaction | c12 |