Chemicals, Peptides, and Recombinant Proteins |
|
|
FM4–64 |
Thermo Fisher Scientific |
Cat#T13320
|
SYTOX Green |
Thermo Fisher Scientific |
Cat#S7020 |
Fosfomycin |
MilliporeSigma |
Cat#P5396 |
Bacitracin |
MilliporeSigma |
Cat#B0125 |
Penicillin V |
MilliporeSigma |
Cat#1504489 |
Cephalexin |
MilliporeSigma |
Cat#C4895 |
Cerulenin |
MilliporeSigma |
Cat#C2389 |
Rifampicin |
MilliporeSigma |
Cat#R3501 |
Experimental Models: Organisms/Strains |
|
|
Bacillus subtilis
PY79 |
Youngman et al., 1984 |
Tax. ID:1415167 |
Bacillus megaterium
QM B1551 |
Dr. Peter Setlow at UConn Health |
Tax. ID:545693 |
Bacillus
thuringiensis subsp. israelenis |
Bacillus Genetic
Stock Center |
4Q2; Tax. ID:339854 |
Bacillus pumilus
BL8 |
Dr. Louise Temple at James Madison
University |
Tax. ID:1189615 |
See
Table
S1 for a complete list of strains used in this paper,
including all the Bacillus subtilis PY79
variants |
N/A |
N/A |
Oligonucleotides |
|
|
See
Table
S2 for oligonucleotides |
N/A |
N/A |
Recombinant DNA |
|
|
Plasmid: pJLG38:
GFPΩkan
|
This paper |
N/A |
Plasmid: pJLG82:
amyE::PsspE(2G)-sspBΩcat
|
This paper |
N/A |
Plasmid: pJLG113:
ileS-ssrAΩkan
|
This paper |
N/A |
Plasmid: pER226: rpsB-GFPΩkan
|
This
paper |
N/A |
Software and Algorithms |
|
|
JFilament |
Smith
et al., 2010 |
http://athena.physics.lehigh.edu/jfilament/ |
volumeestimator |
Ojkic
et al., 2016 |
https://elifesciences.org/articles/18657/figures#SD2-data |
intensityestimator |
This paper |
Data S1 |
IMOD |
Mastronarde, 1997 |
http://bio3d.colorado.edu/imod/; RRID:
SCR_003297 |
TomoSegMemTV |
Martinez-Sanchez et al., 2014 |
https://sites.google.com/site/3demimageprocessing/tomosegmemtv |
Amira |
Commercial software by Thermo
Scientific (formerly FEI) |
https://www.fei.com/software/amira-3d-for-life-sciences/;
RRID: SCR_014305 |
EMAN2 |
Tang
et al., 2007 |
http://blake.bcm.edu/emanwiki/EMAN2 |
Dynamo |
Castaño-Díez et al., 2012 |
https://wiki.dynamo.biozentrum.unibas.ch/w/index.php/Main_Page |