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. 2019 Feb 7;176(4):729–742.e18. doi: 10.1016/j.cell.2018.12.009
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Flag Sigma-Aldrich Cat# F3040; RRID: AB_439712
Glu-Glu Covance Cat# PEP-115P; RRID: AB_291283
Anti-Mouse IgG-HRP Bio Rad Cat #1721011; RRID: AB_11125936
Anti-rabbit IgG-HRP Dako Cat# P0448; RRID: AB_2617138
Biotin anti-human IgG Sigma-Aldrich Cat# SAB3701279 ; RRID: AB_AB_258559
Beta-actin Cell Signaling Technology Cat #4970; RRID: AB_2223172
Calnexin Cell Signaling Technology Cat #2679; RRID: AB_2228381
Anti-mouse AF488 Invitrogen Cat#A28175; RRID: AB_2536161
Anti-rabbit AF568 Invitrogen Cat#A10042; RRID: AB_2534017
Human Neuropilin 1 R&D Systems Cat#AF3870; RRID: AB_884367
Human Neuropilin 2 R&D Systems Cat#MAB2215; RRID: AB_2155370
betaIII tubulin Covance Cat#MRB-435P; RRID: AB_663339
Neuropeptide Y Chemicon Cat#AB1583; RRID: AB_2236176
α-MSH Millipore Cat#AB5087; RRID: AB_91683
Digoxigenin Roche Cat# 11093274910; RRID: AB_514497
Perilipin A Sigma-Aldrich Cat#P1873-200UL; RRID: AB_532267

Bacterial and Virus Strains

Subcloning Efficiency DH5α Competent Cells Thermo Fisher Scientific Cat#18265017
XL10-Gold Agilent Cat# 200315
AAV5-CMV.HI.eGFP-Cre.WPRE.SV40 This paper NA

Biological Samples

Hypothalamus (human fetus at 14 weeks) Dr Prevot, Inserm U1172, Lille, France NA
Hypothalamus (human, 19 years ± 1.5 years) n = 2 Dr Prevot, Inserm U1172, Lille, France NA

Chemicals, Peptides, and Recombinant Proteins

Lipofectamine 2000 Invitrogen Cat#11668027
Semaphorin 3C R&D Systems Cat#5570-S3-050
Wheat Germ Agglutinin, Alexa Fluor 647 Conjugate Invitrogen Cat# W32466

Critical Commercial Assays

T7 Endonuclease I (T7E1) New England Biolabs Cat#M0302
QuantaBlu Fluorogenic Peroxidase Substrate Kit Thermo Fisher Scientific Cat#15169
PicoPure RNA Isolation Kit Thermo Fisher Scientific Cat# KIT0214
RNeasy Lipid Tissue Mini Kit QIAGEN Cat#74804
High-Capacity cDNA Reverse Transcription Kit Thermo Fisher Scientific Cat#4368814

Experimental Models: Cell Lines

HEK293 ATCC CRL-1573
COS-7 ATCC CRL-1651
U87MG Gift from Gera Neufeld NA
HUVEC Gift from Gera Neufeld NA

Experimental Models: Organisms/Strains

Zebrafish: WIK ZDB-GENO-010531-2
Mouse (C57BL/6): Pomc-Cre Balthasar et al., 2004 NA
Mouse (C57BL/6): ROSA-TdTomato reporter line Madisen et al., 2010 NA
Mouse (C57BL/6): Pomc-Cre; Nrp2 loxP/loxP This Paper NA
Mouse (C57BL/6): Nrp2 loxP/loxP Walz et al., 2002 NA

Recombinant DNA

Human Sema3A expression plasmid OriGene CAT#: RC213681
Human Sema3B expression plasmid OriGene CAT#: RC223532
Human Sema3C expression plasmid OriGene CAT#: RC205269
Human Sema3D expression plasmid OriGene CAT#: RC216032
Human Sema3E expression plasmid OriGene CAT#: RC216038
Human Sema3F expression plasmid OriGene CAT#: RC208333
Human Sema3G expression plasmid OriGene CAT#: RC222035
Human PlexinA1 expression plasmid OriGene CAT#: RC222057
Human PlexinA2 expression plasmid OriGene CAT#: RC221024
Human PlexinA3 expression plasmid OriGene CAT#: RC212456
Human PlexinA4 expression plasmid OriGene CAT#: RC226436
Human Neuropilin 1 expression plasmid OriGene CAT#: RC217035
Human Neuropilin 2 expression plasmid OriGene CAT#: RC220920

Software and Algorithms

Ensembl GeneTree https://uswest.ensembl.org/Help/View?id=137 ENSGT00760000119048
Clustal Omega https://www.ebi.ac.uk/Tools/msa/clustalo/ NA
Unrooted http://pbil.univ-lyon1.fr/software/unrooted.html NA
DanRer 10 Varshney et al., 2015 NA
TIDE https://tide.nki.nl/ NA
VerifyBamID (v1.0) http://csg.sph.umich.edu/kang/verifyBamID/ NA
EIGENSTRAT v4.2 Price et al., 2006 NA
PLINK v1.07 https://www.cog-genomics.org/plink2 NA
Fiji https://fiji.sc/ NA
Prism https://www.graphpad.com/scientific-software/prism/ NA
Modeler https://salilab.org/modeller/ NA
Pymol https://pymol.org/2/ NA