Antibodies |
|
Flag |
Sigma-Aldrich |
Cat# F3040; RRID: AB_439712
|
Glu-Glu |
Covance |
Cat# PEP-115P; RRID: AB_291283
|
Anti-Mouse IgG-HRP |
Bio Rad |
Cat #1721011; RRID: AB_11125936
|
Anti-rabbit IgG-HRP |
Dako |
Cat# P0448; RRID: AB_2617138
|
Biotin anti-human IgG |
Sigma-Aldrich |
Cat# SAB3701279 ; RRID: AB_AB_258559
|
Beta-actin |
Cell Signaling Technology |
Cat #4970; RRID: AB_2223172
|
Calnexin |
Cell Signaling Technology |
Cat #2679; RRID: AB_2228381
|
Anti-mouse AF488 |
Invitrogen |
Cat#A28175; RRID: AB_2536161
|
Anti-rabbit AF568 |
Invitrogen |
Cat#A10042; RRID: AB_2534017
|
Human Neuropilin 1 |
R&D Systems |
Cat#AF3870; RRID: AB_884367
|
Human Neuropilin 2 |
R&D Systems |
Cat#MAB2215; RRID: AB_2155370
|
betaIII tubulin |
Covance |
Cat#MRB-435P; RRID: AB_663339
|
Neuropeptide Y |
Chemicon |
Cat#AB1583; RRID: AB_2236176
|
α-MSH |
Millipore |
Cat#AB5087; RRID: AB_91683
|
Digoxigenin |
Roche |
Cat# 11093274910; RRID: AB_514497
|
Perilipin A |
Sigma-Aldrich |
Cat#P1873-200UL; RRID: AB_532267
|
|
Bacterial and Virus Strains |
|
Subcloning Efficiency DH5α Competent Cells |
Thermo Fisher Scientific |
Cat#18265017 |
XL10-Gold |
Agilent |
Cat# 200315 |
AAV5-CMV.HI.eGFP-Cre.WPRE.SV40 |
This paper |
NA |
|
Biological Samples |
|
Hypothalamus (human fetus at 14 weeks) |
Dr Prevot, Inserm U1172, Lille, France |
NA |
Hypothalamus (human, 19 years ± 1.5 years) n = 2 |
Dr Prevot, Inserm U1172, Lille, France |
NA |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Lipofectamine 2000 |
Invitrogen |
Cat#11668027 |
Semaphorin 3C |
R&D Systems |
Cat#5570-S3-050 |
Wheat Germ Agglutinin, Alexa Fluor 647 Conjugate |
Invitrogen |
Cat# W32466
|
|
Critical Commercial Assays |
|
T7 Endonuclease I (T7E1) |
New England Biolabs |
Cat#M0302 |
QuantaBlu Fluorogenic Peroxidase Substrate Kit |
Thermo Fisher Scientific |
Cat#15169 |
PicoPure RNA Isolation Kit |
Thermo Fisher Scientific |
Cat# KIT0214 |
RNeasy Lipid Tissue Mini Kit |
QIAGEN |
Cat#74804 |
High-Capacity cDNA Reverse Transcription Kit |
Thermo Fisher Scientific |
Cat#4368814 |
|
Experimental Models: Cell Lines |
|
HEK293 |
ATCC |
CRL-1573 |
COS-7 |
ATCC |
CRL-1651 |
U87MG |
Gift from Gera Neufeld |
NA |
HUVEC |
Gift from Gera Neufeld |
NA |
|
Experimental Models: Organisms/Strains |
|
Zebrafish: WIK |
|
ZDB-GENO-010531-2 |
Mouse (C57BL/6): Pomc-Cre |
Balthasar et al., 2004 |
NA |
Mouse (C57BL/6): ROSA-TdTomato reporter line |
Madisen et al., 2010 |
NA |
Mouse (C57BL/6): Pomc-Cre; Nrp2 loxP/loxP |
This Paper |
NA |
Mouse (C57BL/6): Nrp2 loxP/loxP |
Walz et al., 2002 |
NA |
|
Recombinant DNA |
|
Human Sema3A expression plasmid |
OriGene |
CAT#: RC213681 |
Human Sema3B expression plasmid |
OriGene |
CAT#: RC223532 |
Human Sema3C expression plasmid |
OriGene |
CAT#: RC205269 |
Human Sema3D expression plasmid |
OriGene |
CAT#: RC216032 |
Human Sema3E expression plasmid |
OriGene |
CAT#: RC216038 |
Human Sema3F expression plasmid |
OriGene |
CAT#: RC208333 |
Human Sema3G expression plasmid |
OriGene |
CAT#: RC222035 |
Human PlexinA1 expression plasmid |
OriGene |
CAT#: RC222057 |
Human PlexinA2 expression plasmid |
OriGene |
CAT#: RC221024 |
Human PlexinA3 expression plasmid |
OriGene |
CAT#: RC212456 |
Human PlexinA4 expression plasmid |
OriGene |
CAT#: RC226436 |
Human Neuropilin 1 expression plasmid |
OriGene |
CAT#: RC217035 |
Human Neuropilin 2 expression plasmid |
OriGene |
CAT#: RC220920 |
|
Software and Algorithms |
|
Ensembl GeneTree |
https://uswest.ensembl.org/Help/View?id=137 |
ENSGT00760000119048 |
Clustal Omega |
https://www.ebi.ac.uk/Tools/msa/clustalo/ |
NA |
Unrooted |
http://pbil.univ-lyon1.fr/software/unrooted.html |
NA |
DanRer 10 |
Varshney et al., 2015 |
NA |
TIDE |
https://tide.nki.nl/ |
NA |
VerifyBamID (v1.0) |
http://csg.sph.umich.edu/kang/verifyBamID/ |
NA |
EIGENSTRAT v4.2 |
Price et al., 2006 |
NA |
PLINK v1.07 |
https://www.cog-genomics.org/plink2 |
NA |
Fiji |
https://fiji.sc/ |
NA |
Prism |
https://www.graphpad.com/scientific-software/prism/ |
NA |
Modeler |
https://salilab.org/modeller/ |
NA |
Pymol |
https://pymol.org/2/ |
NA |