Table 1.
The salt-responsive TFs identified by searching against the Stress Responsive Transcription Factor Database (STIDB) in Arabidopsis in the leaves and roots of the two eggplant materials. SS_0h_L/R-Expression: the mean expression level of each TF after NaCl treatment for 0 h in the leaves/roots of SS30; log2Ratio(s2/s1): Log2(folds of mean expression in two time points); q-value: corrected p-value [41, 42]; Tair10: gene ID in Arabidosis corresponding to the TFs in eggplant
| Gene ID | SS_0h_L-Expression | SS_12h_L-Expression | log2Ratio(SS_12h_L/SS_0h_L) | q-value | ST_0h_L-Expression | ST_12h_L-Expression | log2Ratio(ST_12h_L/ST_0h_L) | q-value | Tair10 | TF family | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ST-SS-L-inter | Sme2.5_05868.1_g00004.1 | 10,615 | 340 | −4.90 | 0.000 | 9160 | 198 | −5.51 | 0.000 | AT5G17300.1 | MYB |
| Sme2.5_02956.1_g00004.1 | 1971 | 82 | −4.52 | 0.000 | 1949 | 53 | −5.18 | 0.000 | AT5G17300.1 | MYB | |
| Sme2.5_02470.1_g00007.1 | 69 | 2 | −5.04 | 0.000 | 26 | 3 | −3.09 | 0.000 | AT1G69490.1 | NAC | |
| Sme2.5_00096.1_g00018.1 | 270.17 | 21.3 | −3.60 | 0.000 | 412.04 | 71.58 | −2.50 | 0.000 | AT5G57550.1 | NAC | |
| Sme2.5_01620.1_g00005.1 | 797 | 204 | −1.90 | 0.000 | 837 | 169 | −2.29 | 0.000 | AT4G37180.1 | G2-like | |
| Sme2.5_08291.1_g00004.1 | 845 | 176 | −2.19 | 0.000 | 728 | 161 | −2.15 | 0.000 | AT1G70000.2 | MYB | |
| Sme2.5_03858.1_g00003.1 | 482 | 133 | −1.79 | 0.000 | 538 | 162 | − 1.71 | 0.000 | AT1G13260.1 | AP2-EREBP | |
| Sme2.5_00276.1_g00022.1 | 788 | 107 | −2.81 | 0.000 | 759 | 229 | −1.71 | 0.000 | AT1G01720.1 | NAC | |
| Sme2.5_11816.1_g00001.1 | 60.47 | 3.95 | −3.87 | 0.000 | 41.65 | 12.75 | −1.69 | 0.000 | AT3G23250.1 | MYB | |
| Sme2.5_01393.1_g00007.1 | 4149 | 1469 | −1.43 | 0.000 | 3623 | 1217 | −1.55 | 0.000 | AT1G05690.1 | TAZ | |
| Sme2.5_15135.1_g00001.1 | 1360 | 291 | −2.16 | 0.000 | 609 | 209 | −1.52 | 0.000 | AT1G69490.1 | NAC | |
| Sme2.5_06280.1_g00002.1 | 3950 | 1499 | −1.33 | 0.000 | 4342 | 1544 | −1.47 | 0.000 | AT5G17300.1 | MYB | |
| Sme2.5_06485.1_g00004.1 | 8176 | 3330 | −1.23 | 0.000 | 8302 | 2979 | −1.46 | 0.000 | AT5G24930.1 | C2C2-CO-like | |
| Sme2.5_01575.1_g00001.1 | 3303 | 881 | −1.84 | 0.000 | 2935 | 1065 | −1.44 | 0.000 | AT3G49530.1 | NAC | |
| Sme2.5_00014.1_g00027.1 | 526.44 | 234 | −1.10 | 0.000 | 723.52 | 281 | −1.34 | 0.000 | AT1G06180.1 | MYB | |
| Sme2.5_04750.1_g00001.1 | 694.26 | 114.48 | −2.53 | 0.000 | 826.05 | 328.84 | −1.31 | 0.000 | AT4G25480.1 | AP2-EREBP | |
| Sme2.5_07791.1_g00001.1 | 7184 | 3294 | −1.06 | 0.000 | 7823 | 3284 | −1.23 | 0.000 | AT3G59060.4 | bHLH | |
| Sme2.5_01200.1_g00003.1 | 215 | 51 | −2.01 | 0.000 | 428 | 192 | −1.13 | 0.000 | AT1G19180.1 | Tify | |
| Sme2.5_00556.1_g00019.1 | 57 | 6 | −3.18 | 0.000 | 55 | 125 | 1.21 | 0.000 | AT1G80840.1 | WRKY | |
| Sme2.5_00912.1_g00004.1 | 380 | 800 | 1.14 | 0.000 | 369 | 965 | 1.41 | 0.000 | AT3G47600.1 | MYB | |
| Sme2.5_00183.1_g00008.1 | 1957.44 | 3883.65 | 1.06 | 0.000 | 1410.45 | 4358.31 | 1.65 | 0.000 | AT5G58620.1 | C3H | |
| Sme2.5_00196.1_g00009.1 | 28 | 4583 | 7.42 | 0.000 | 8 | 4224 | 9.07 | 0.000 | AT3G07650.4 | C2C2-CO-like | |
| ST118-L-Spe | Sme2.5_00956.1_g00005.1 | 3381 | 2072 | −0.64 | 0.000 | 4888 | 1138 | −2.08 | 0.000 | AT3G48360.1 | TAZ |
| Sme2.5_25982.1_g00001.1 | 3698 | 1883 | −0.90 | 0.000 | 3651 | 1404 | −1.36 | 0.000 | AT5G57660.1 | C2C2-CO-like | |
| Sme2.5_08533.1_g00002.1 | 36.34 | 19.06 | −0.86 | 0.037 | 60.75 | 26.25 | −1.19 | 0.000 | AT3G23250.1 | MYB | |
| Sme2.5_00641.1_g00007.1 | 157 | 157 | 0.07 | 0.488 | 295.19 | 129 | −1.17 | 0.000 | AT4G27410.2 | NAC | |
| Sme2.5_06310.1_g00004.1 | 296.78 | 158.58 | −0.84 | 0.000 | 292.67 | 129.1 | −1.16 | 0.000 | AT2G36800.1 | WRKY | |
| Sme2.5_00332.1_g00002.1 | 8112.3 | 4172.0 | −0.89 | 0.000 | 8253.0 | 3671.4 | −1.15 | 0.000 | AT1G19000.2 | MYB | |
| Sme2.5_12868.1_g00001.1 | 6358 | 3737 | −0.70 | 0.000 | 5384 | 2440 | −1.12 | 0.000 | AT3G16770.1 | AP2-EREBP | |
| Sme2.5_00048.1_g00015.1 | 481 | 727 | 0.66 | 0.000 | 1070 | 2124 | 1.01 | 0.000 | AT5G63160.1 | TAZ | |
| Sme2.5_04588.1_g00001.1 | 200 | 213 | 0.16 | 0.240 | 137 | 333 | 1.30 | 0.000 | AT4G28140.1 | AP2-EREBP | |
| Sme2.5_00556.1_g00018.1 | 47 | 71 | 0.66 | 0.017 | 14 | 63 | 2.19 | 0.000 | AT1G80840.1 | WRKY | |
| SS30-L-Spe | Sme2.5_29353.1_g00001.1 | 432.73 | 0 | −9.69 | 0.000 | 24.3 | 19.19 | −0.32 | 0.368 | AT4G27410.3 | NAC |
| Sme2.5_03951.1_g00007.1 | 77 | 8 | −3.20 | 0.000 | 59 | 96 | 0.72 | 0.003 | AT3G23250.1 | MYB | |
| Sme2.5_04750.1_g00004.1 | 112.81 | 13.96 | −2.95 | 0.000 | 93.19 | 46.66 | −0.98 | 0.000 | AT4G25480.1 | AP2-EREBP | |
| Sme2.5_03886.1_g00002.1 | 48 | 6 | −2.93 | 0.000 | 32 | 63 | 1.00 | 0.001 | AT2G43000.1 | NAC | |
| Sme2.5_04190.1_g00001.1 | 110 | 16 | −2.71 | 0.000 | 121 | 92 | −0.37 | 0.064 | AT1G80840.1 | WRKY | |
| Sme2.5_01372.1_g00013.1 | 5293 | 1538 | −1.71 | 0.000 | 4593 | 3439 | −0.40 | 0.000 | AT1G80840.1 | WRKY | |
| Sme2.5_04464.1_g00002.1 | 55 | 22 | −1.25 | 0.000 | 34 | 51 | 0.61 | 0.059 | AT2G43000.1 | NAC | |
| Sme2.5_02104.1_g00004.1 | 4983 | 2298 | −1.05 | 0.000 | 3591 | 3810 | 0.11 | 0.002 | AT1G32640.1 | bHLH | |
| Sme2.5_04924.1_g00003.1 | 3418 | 1595 | −1.03 | 0.000 | 3295 | 1821 | −0.83 | 0.000 | AT1G19180.1 | Tify | |
| Sme2.5_04168.1_g00003.1 | 5649 | 2674 | −1.01 | 0.000 | 3244 | 1645 | −0.96 | 0.000 | AT1G01720.1 | NAC | |
| Sme2.5_15021.1_g00001.1 | 232 | 566 | 1.36 | 0.000 | 352 | 622 | 0.84 | 0.000 | AT2G30590.1 | WRKY | |
| GeneID | SS30_0h-Expression | SS30_12h-Expression | log2Ratio(SS30_12h/SS30_0h) | q-value(Storey et al. 2003) | ST118_0h-Expression | ST118_12h-Expression | log2Ratio(ST118_12h/ST118_0h) | q-value(Storey et al. 2003) | Tair 10 | TF family | |
| ST-SS-R-inter | Sme2.5_02956.1_g00004.1 | 1051 | 128 | −3.04 | 0.000 | 1040 | 51 | −4.43 | 0.000 | AT5G17300.1 | MYB |
| Sme2.5_25982.1_g00001.1 | 1392 | 197 | −2.82 | 0.000 | 1473 | 84 | −4.21 | 0.000 | AT5G57660.1 | C2C2-CO-like | |
| Sme2.5_05868.1_g00004.1 | 937 | 123 | −2.93 | 0.000 | 844 | 88 | −3.34 | 0.000 | AT5G17300.1 | MYB | |
| Sme2.5_06280.1_g00002.1 | 2912 | 512 | −2.51 | 0.000 | 2233 | 478 | −2.30 | 0.000 | AT5G17300.1 | MYB | |
| Sme2.5_06485.1_g00004.1 | 969 | 401 | −1.27 | 0.000 | 1205 | 372 | −1.77 | 0.000 | AT5G24930.1 | C2C2-CO-like | |
| Sme2.5_07791.1_g00001.1 | 415 | 166 | −1.32 | 0.000 | 310 | 148 | −1.14 | 0.000 | AT3G59060.4 | bHLH | |
| Sme2.5_08000.1_g00008.1 | 140 | 392 | 1.49 | 0.000 | 151 | 571 | 1.84 | 0.000 | AT3G22830.1 | HSF | |
| Sme2.5_00196.1_g00009.1 | 72 | 794 | 3.46 | 0.000 | 30 | 915 | 4.85 | 0.000 | AT3G07650.4 | C2C2-CO-like | |
| ST118-R-Spe | Sme2.5_00956.1_g00005.1 | 1900 | 1231 | −0.62 | 0.000 | 1857 | 722 | −1.44 | 0.000 | AT3G48360.1 | TAZ |
| Sme2.5_08291.1_g00004.1 | 1321 | 684 | −0.95 | 0.000 | 1487 | 702 | −1.16 | 0.000 | AT1G70000.2 | MYB | |
| Sme2.5_00374.1_g00013.1 | 1098 | 606 | −0.86 | 0.000 | 889 | 462 | −1.02 | 0.000 | AT1G78080.1 | AP2-EREBP | |
| Sme2.5_06157.1_g00002.1 | 1512 | 2700 | 0.84 | 0.000 | 1314 | 3453 | 1.32 | 0.000 | AT3G16770.1 | AP2-EREBP | |
| Sme2.5_00048.1_g00015.1 | 3223 | 2556 | −0.33 | 0.000 | 2486 | 6901 | 1.39 | 0.000 | AT5G63160.1 | TAZ | |
| SS30-R-Spe | Sme2.5_29353.1_g00001.1 | 218.17 | 7.6 | −4.84 | 0.000 | 0 | 5.73 | 3.44 | 0.061 | AT4G27410.3 | NAC |
| Sme2.5_02470.1_g00007.1 | 160 | 20 | −3.00 | 0.000 | 51 | 27 | −1.00 | 0.009 | AT1G69490.1 | NAC | |
| Sme2.5_15135.1_g00001.1 | 48 | 12 | −2.00 | 0.000 | 14 | 17 | 0.20 | 0.651 | AT1G69490.1 | NAC | |
| Sme2.5_04464.1_g00002.1 | 56 | 16 | −1.81 | 0.000 | 27 | 17 | −0.75 | 0.159 | AT2G43000.1 | NAC | |
| Sme2.5_03858.1_g00003.1 | 491 | 157 | −1.64 | 0.000 | 350 | 301 | −0.30 | 0.023 | AT1G13260.1 | AP2-EREBP | |
| Sme2.5_03434.1_g00003.1 | 77 | 26 | −1.56 | 0.000 | 67 | 51 | −0.47 | 0.139 | AT2G31180.1 | MYB | |
| Sme2.5_24078.1_g00001.1 | 4527 | 2049 | −1.14 | 0.000 | 4664 | 2685 | −0.87 | 0.000 | AT5G67480.2 | TAZ | |
| Sme2.5_09948.1_g00004.1 | 41.98 | 83.96 | 1.00 | 0.001 | 41.92 | 59.97 | 0.44 | 0.208 | AT5G26660.1 | MYB |