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. 2019 Feb 11;20:31. doi: 10.1186/s13059-019-1639-x

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© The Author(s) 2019

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Proportions of cluster assignments for CellFishing.jl and scmap-cell. The rows are labels of query cells and the columns are labels of their nearest neighbor. Cluster labels are ordered by the cluster size, from top to bottom (rows) or left to right (columns) in decreasing order. The values are derived from a cross-validation with the default parameters and normalized row-wise (i.e., the sum of values in a row is 1)