Table 4.
Novel isoforms. Table of the 20 most significantly differentially expressed novel isoforms
| New Isoform ID | Closest Known Transcript | Locus | Treated FPKM | Untreated FPKM | Log2 Fold Change | q_value |
|---|---|---|---|---|---|---|
| XLOC_028771 | Fam71f2 | 6:29275646–29,290,927 | 8.97 | 1.06 | −3.08 | 0.00942353 |
| XLOC_000700 | Cyb5r1 | 1:134405743–134,411,742 | 60.75 | 7.19 | −3.08 | 0.00942353 |
| XLOC_011906 | Grina | 15:76246785–76,249,913 | 131.99 | 18.55 | −2.83 | 0.00942353 |
| XLOC_008363 | Idi1 | 13:8885500–8,892,451 | 8.47 | 55.59 | 2.72 | 0.00942353 |
| XLOC_034570 | Mcm5 | 8:75109527–75,128,439 | 5.52 | 29.52 | 2.42 | 0.00942353 |
| XLOC_004629 | Coro6 | 11:77462410–77,470,484 | 8.76 | 1.76 | −2.31 | 0.0478209 |
| XLOC_013221 | Tfrc | 16:32608919–32,632,794 | 4.92 | 23.57 | 2.26 | 0.00942353 |
| XLOC_033943 | Mki67 | 7:135689785–135,716,379 | 1.74 | 8.18 | 2.24 | 0.00942353 |
| XLOC_016993 | Fads1 | 19:10182887–10,196,878 | 7.66 | 32.64 | 2.09 | 0.0227413 |
| XLOC_010082 | Nt5dc2 | 14:31131073–31,168,641 | 6.74 | 26.89 | 2.0 | 0.0391793 |
| XLOC_014349 | Srrm2 | 17:23803186–23,824,739 | 47.42 | 13.38 | −1.83 | 0.00942353 |
| XLOC_033943 | Mki67 | 7:135689785–135,716,379 | 4.87 | 17.22 | 1.82 | 0.00942353 |
| XLOC_015979 | Lama3 | 18:12334023–12,584,803 | 25.18 | 7.54 | −1.74 | 0.00942353 |
| XLOC_018214 | Nelf | 2:25054354–25,062,889 | 20.9 | 6.28 | −1.73 | 0.0343286 |
| XLOC_011906 | Grina | 15:76246785–76,249,913 | 223.87 | 68.17 | −1.72 | 0.00942353 |
| XLOC_002731 | Eea1 | 10:95940662–96,046,110 | 15.68 | 4.81 | −1.7 | 0.0162365 |
| XLOC_022994 | Fdps | 3:89093587–89,101,967 | 43.96 | 142.23 | 1.69 | 0.00942353 |
| XLOC_027325 | Kntc1 | 5:123749725–123,821,593 | 2.24 | 6.56 | 1.55 | 0.00942353 |
| XLOC_023920 | Smc2 | 4:52439242–52,488,364 | 4.49 | 13.04 | 1.54 | 0.00942353 |
| XLOC_022503 | Cenpe | 3:135212562–135,273,540 | 6.55 | 18.92 | 1.53 | 0.0433531 |
Treated and untreated columns show group average FPKM values. FPKM is a unit of measurement of gene expression (fragments per kilobase of transcript per million mapped reads). Novel transcripts with the highest fold change between groups are shown at the top of the table. The fold change is the log2-fold change in FPKM between the treated and untreated groups. q-values shown are p-values that have been adjusted using the Benjamini-Hochberg false discovery rate (FDR) approach to correct for multiple testing. As a general guide, fold changes with q-values below 0.05 are considered significant