Table 2.

Verification of putatively chimeric scaffolds by PCR.

Statistics	Camel
Pair-end read physical coverage within scaffolds	5.5 – 329.7
No. split SF adjacencies by RACA (default param.)	49
No. tested scaffold split regions	27
No. amplified split regions (confirmed SF joints)	14
No. non-amplified split regions	13
No. tested RACA-suggested adjacencies	18
No. amplified adjacencies (chimeric SF joints)	7
No. non-amplified adjacencies	11
Final no. ambiguous SF joints from tested split regions	11
Selected pair-end read spanning threshold	212.5
No. tested split regions found below selected threshold	22
No. chimeric SF joints	7
No. confirmed SF joints	4
No. ambiguous SF joints	11
No. tested split regions found above selected threshold	10
No. chimeric SF joints	0
No. confirmed SF joints	10
No. ambiguous SF joints	0