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. 2019 Feb 6;10:35. doi: 10.3389/fmicb.2019.00035

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Copyright © 2019 Gillingham, Béchet, Cézilly, Wilhelm, Rendón-Martos, Borghesi, Nissardi, Baccetti, Azafzaf, Menke, Kayser and Sommer.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Odds ratio (exponential of parameter estimates) of the GLM (with a Binomial distribution and logit link function) of the relative abundance of ASV belonging to phylum within individual according to sampling unit for Proteobacteria (A), Firmicutes (B), Actinobacteria (C), Bacteroidetes (D), Fusobacteria (E), and Synergistetes (F). The intercept (dotted black line) is fledgling samples from Camargue in 2015. Odds ratio values are displayed as well as significance relative to the intercept (^∗p = 0.05, ^∗∗p = 0.01, ^∗∗∗p < 0.001). The dashed red line separates adult samples from fledgling samples.