Table 1.
General genomic attributes of 14 outlier strains of P. aeruginosa: ANIm values were calculated between CR1 and other outliers.
| Strain | Origin (Country) | Genome size | Number of contigs | Genes | Sequence type | tRNAs | rRNAs (5S, 16S, 23S) | GC content (%) | CRISPR arrays | Prophage regions | Completeness (Genes/%) | ANIm (%) | DDH∗(%) | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PA7 | Burn wound (Argentina) | 6588339 | 1 | 6302 | 1195 | 75 | 4,4,4 | 66.5 | 3 | 4 | 107 (100) | 98.97 | 91.1 | Roy et al., 2010 |
| CR1 | Rhizosphere (India) | 6164858 | 2 | 5838 | 3198 | 76 | 4,4,4 | 66.8 | 5 | 2 | 107 (100) | 100 | 100 | This study |
| ATCC 9027 | Otitis (Australia) | 6362326 | 80 | 6121 | 2230 | 69 | 1,1,1 | 66.6 | 1 | 2 | 106 (99.06) | 99.33 | 93.9 | Mai-Prochnow et al., 2015 |
| AZPAE14901 | Abcess/Pus (India) | 6881448 | 232 | 6709 | 2212 | 63 | 1,1,1 | 66.2 | 5 | 2 | 105 (98.13) | 99.32 | 86.6 | Kos et al., 2015 |
| AZPAE14941 | Peritoneal (Hong Kong) | 6881480 | 183 | 6722 | Not Assigned | 66 | 2,1,1 | 66.0 | 3 | 2 | 105 (98.13) | 98.94 | 85.7 | Kos et al., 2015 |
| AZPAE15042 | Urinary (Germany) | 6636169 | 143 | 6470 | 2211 | 69 | 1,1,1 | 66.3 | 3 | 1 | 105 (98.13) | 99.36 | 90.7 | Kos et al., 2015 |
| EML528 | Unknown (Germany) | 6365411 | 53 | 6064 | 3043 | 70 | 2,1,1 | 66.6 | 4 | 1 | 107 (100) | 98.95 | 91.7 | Boukerb et al., 2015 |
| EML545 | Unknown (Germany) | 6442089 | 64 | 6142 | 2228 | 68 | 3,3,3 | 66.6 | 3 | 2 | 107 (100) | 99.37 | 94.0 | Boukerb et al., 2015 |
| EML548 | Unknown (Germany) | 6333473 | 120 | 6088 | 2230 | 73 | 4,4,4 | 66.6 | 1 | 2 | 103 (96.26) | 99.34 | 93.8 | Boukerb et al., 2015 |
| WH-SGI-V-07055 | Clinical (United States) | 6757340 | 102 | 6532 | 2023 | 67 | 7,1,1 | 66.4 | 3 | 5 | 107 (100) | 98.90 | 89.6 | van Belkum et al., 2015 |
| WH-SGI-V-07064 | Clinical (United States) | 6336003 | 87 | 6066 | 1195 | 68 | 6,1,1 | 66.7 | 2 | 3 | 105 (98.13) | 98.96 | 93.8 | van Belkum et al., 2015 |
| WH-SGI-V-07072 | Clinical (United States) | 6373176 | 88 | 6103 | 1195 | 68 | 6,1,1 | 66.6 | 2 | 1 | 105 (98.13) | 98.95 | 93.5 | van Belkum et al., 2015 |
| WH-SGI-V-07370 | Clinical (France) | 6581092 | 174 | 6358 | 2047 | 67 | 6,1,1 | 66.4 | 2 | 2 | 105 (98.13) | 98.94 | 91.1 | van Belkum et al., 2015 |
| WH-SGI-V-07618 | Clinical (United States) | 6845114 | 159 | 6622 | 2023 | 68 | 9,1,1 | 66.2 | 3 | 4 | 105 (98.13) | 98.90 | 88.7 | van Belkum et al., 2015 |
∗GGDC server was used to calculate genome to genome distance among outliers.