Table 2.
Details to RGPs found in strain CR1: number of ORFs, GC content, tRNA, integrase and transposase genes, major annotation, similarity/origin, and putative functions.
| GI (RGP) | Size (bp) | %G+C | tRNA | Integrase | Transposase | Major annotations | Similarity | Putative functions |
|---|---|---|---|---|---|---|---|---|
| RGP98 | 4,694 | 55.86 | No | No | Yes | Mobile Genetic Elements, Helicase, Bacterial Partitioning Protein | Helicase and Partitioning proteins have origins from Bordetella and Acidhalobacter | Transposition of genetic elements |
| RGP99 | 41,377 | 64.21 | Yes | Yes | No | Phage-related proteins, Hypothetical proteins | Major hits from Stenotrophomonas Phage S1 | Recombination (presence of attL and attR sites) |
| RGP100 | 7,638 | 64.68 | No | No | No | Type I secretion protein (TolC), ABC Transporters, ATP-binding proteins, haemolysin D, YceK/YidQ family proteins | Non-Pseudomonas aeruginosa origin | TISS (pathogenic potential) |
| RGP101 | 7,313 | 51.21 | No | Yes | No | Hypothetical proteins | Classical strains of P. aeruginosa | Hypothetical proteins |
| RGP102 | 11,296 | 66.10 | No | No | No | Hypothetical proteins | Non-Pseudomonas origin; Burkholderia and Xylella | Unknown |
| RGP103 | 14,440 | 65.93 | Yes | Yes | No | Formaldehyde activating enzyme, aldehyde dehydrogenase; aldo/keto reductase, Gluconate dehydratase. | Pseudomonas citronellolis | Aldehyde Detoxification; D-gluconate and ketogluconate metabolism |
| RGP104 | 12,652 | 58.79 | Yes | No | No | Amino acid permease, arginine/agmatine antiporter, SAM-dependent methyltransferase | Origin from classical strains of P. aeruginosa | Acid tolerance/resistance |
| RGP105 | 4,251 | 60.50 | No | No | No | rhiA, rhiB genes, transcriptional regulators | Origin from soil inhabiting bacteria like Rhizobium | Rhizosphere expressed genes |