TABLE 1.
Effect of TSR read cutoff on the ratio of control to flavopiridol TSRsa
| No. of minimum reads/TSR |
No. of TSRs in HFF |
Control/Flavo | |
|---|---|---|---|
| Control | Flavo | ||
| 20 | 14,006 | 7,478 | 1.9 |
| 30 | 11,852 | 5,725 | 2.1 |
| 40 | 10,087 | 4,718 | 2.1 |
| 50 | 8,712 | 4,068 | 2.1 |
| 60 | 7,616 | 3,553 | 2.1 |
| 70 | 6,760 | 3,229 | 2.1 |
| 80 | 6,086 | 2,947 | 2.1 |
| 90 | 5,529 | 2,723 | 2.0 |
| 100 | 5,044 | 2,551 | 2.0 |
a
Flavo, treated with flavopiridol. tsrFinder was used to discover the number of TSRs in both the control and flavopiridol data sets at the indicated number of minimum reads per TSR and the ratios of the numbers of control to flavopiridol TSRs were calculated.