Table 1.
The list of species and strains included in this study, with reference to the identification number of the proteome and the organism in the UniProt database, as well as the number of proteins annotated
| Organism | Group | Proteome ID | Organism ID | Protein count |
|---|---|---|---|---|
| Borrelia afzelii (strain PKo) | Lb | UP000005216 | 390,236 | 1394 |
| Borrelia anserina | Rf | UP000019262 | 1,313,293 | 855 |
| Borrelia bavariensis (Strain: ATCC BAA-2496 / DSM 23469 / PBi) | Lb | UP00000276 | 290,434 | 1262 |
| Borrelia bissettiae (Strain: CO275) | Lb | UP000183624 | 64,897 | 1794 |
| Borrelia bissettiae (Strain: DN127) | Lb | UP000001634 | 521,010 | 1403 |
| Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) | Lb | UP000001807 | 224,326 | 1290 |
| Borrelia burgdorferi (strain ZS7) | Lb | UP000006901 | 445,985 | 1223 |
| Borrelia burgdorferi 64b | Lb | UP000006162 | 498,740 | 1518 |
| Borrelia coriaceae Co53 | Rf | UP000019330 | 1,313,292 | 895 |
| Borrelia crocidurae (strain Achema) | Rf | UP000005212 | 1,155,096 | 1469 |
| Borrelia crocidurae DOU | Rf | UP000000612 | 1,293,575 | 845 |
| Borrelia duttonii (strain Ly) | Rf | UP000000611 | 412,419 | 1287 |
| Borrelia duttonii CR2A | Rf | UP000019148 | 1,432,657 | 1995 |
| Borrelia garinii PBr | Lb | UP000006103 | 498,743 | 1346 |
| Borrelia hermsii (Strain: DAH-2E7) | Rf | UP000075229 | 140 | 1230 |
| Borrelia hermsii MTW | Rf | UP000019324 | 1,313,291 | 840 |
| Borrelia mayonii (Strain: MN14–1539) | Lb | UP000185492 | 1,674,146 | 1131 |
| Borrelia miyamotoi (Strain: CT13–2396) | Rf | UP000176410 | 47,466 | 1079 |
| Borrelia miyamotoi FR64b | Rf | UP000019332 | 1,292,392 | 874 |
| Borrelia parkeri SLO | Rf | UP000019331 | 1,313,294 | 873 |
| Borrelia recurrentis (strain A1) | Rf | UP000000612 | 412,418 | 977 |
| Borrelia turicatae (strain 91E135) | Rf | UP000019262 | 1,313,293 | 855 |
| Borreliella chilensis (Strain: VA1) | Lb | UP000030940 | 1,245,910 | 898 |
| Borreliella finlandensis (Strain: SV1) | Lb | UP000006166 | 498,741 | 1300 |
| Borreliella spielmanii A14S | Lb | UP000003481 | 498,742 | 1297 |
| Borreliella valaisiana VS116 | Lb | UP000006163 | 445,987 | 1349 |
| Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) | LTB | UP000001803 | 565,034 | 2642 |
| Brachyspira pilosicoli B2904 | LTB | UP000007346 | 1,133,568 | 2637 |
| Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) | LTB | UP000001847 | 456,481 | 3723 |
| Leptospira borgpetersenii str. 200,701,203 | LTB | UP000011783 | 1,193,007 | 4773 |
| Leptospira interrogans serovar Lai | LTB | UP000001408 | 57,678 | 3676 |
| Sediminispirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) | FL | UP000002318 | 573,413 | 4211 |
| Sphaerochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) | FL | UP000007939 | 760,011 | 1819 |
| Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) | FL | UP000008466 | 158,189 | 3007 |
| Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) | FL | UP000005632 | 158,190 | 3150 |
| Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) | FL | UP000007383 | 889,378 | 2766 |
| Spirochaeta lutea | FL | UP000029692 | 1,480,694 | 2285 |
| Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) | FL | UP000001296 | 665,571 | 2199 |
| Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) | LTB | UP000008212 | 243,275 | 2753 |
| Treponema maltophilum ATCC 51939 | LTB | UP000014541 | 1,125,699 | 2287 |
| Treponema pallidum (strain Nichols) | LTB | UP000000811 | 243,276 | 1028 |
The organisms are alphabetically sorted and are included according to its standard denomination in UniProt. The column “group” indicates the four main groups of taxa considered in this study: Rf relapsing fever species of Borrelia, Lb Lyme borreliosis group of Borrelia spp., FL free-life species, LTB parasitic species without vector