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. Author manuscript; available in PMC: 2020 Feb 1.
Published in final edited form as: J Mol Biol. 2018 Dec 7;431(3):524–541. doi: 10.1016/j.jmb.2018.11.030

Table 2.

SAXS analysis of LsALDH16 and HsALDH16A1

LsALDH16 HsALDH16A1
2.0 mg/ml 4.0 mg/ml 6.0 mg/ml 1.0 mg/ml 1.6 mg/ml 3.2 mg/ml
Guinier Analysis
Rg (Å) 35.6 ± 1.0 36.1 ± 0.4 35.0 ± 0.6 36.3 ± 1.0 37.5 ± 0.9 37.6 ± 0.5
qmin−1) 0.015887 0.015330 0.018675 0.015887 0.011985 0.014215
qRg range 0.57 – 1.28 0.55 – 1.30 0.65 – 1.22 0.58 – 1.29 0.45 – 1.29 0.53 – 1.29
R-square 0.9972 0.9991 0.9984 0.9899 0.9930 0.9980
P(r) analysisa
Rg (Å) 35.5 ± 0.2 35.68 ± 0.06 35.22 ± 0.04 36.65 ± 0.08 37.50 ± 0.06 37.48 ± 0.06
Dmax (Å) 109 112 106 109 112 115
q-range (Å−1) 0.0159 – 0.3219 0.0153 – 0.3208 0.0187 – 0.3208 0.0159 – 0.3219 0.0131 – 0.3219 0.0148 – 0.3213
 Total estimate 0.91 0.90 0.94 0.92 0.93 0.88
 Porod Volume (Å3) 202000 204000 207000 230000 236000 237000
SAXS mass (kDa)b 141.5 (0.93) 151.3 (1.00) 149.2 (0.98) 147.1 (0.86) 156.0 (0.92) 170.1 (1.00)
χ2 from FoXSc 0.16 0.68 0.95 1.12 1.45 2.38
SASBDB code SASDE47 SASDE57 SASDE67 SASDE87 SASDE97 SASDEA7
a

From calculations of the distance distribution function using GNOM via PRIMUS.

b

Molecular mass estimated from the SAXS MoW2 server [58]. The ratio of the experimental molecular mass to the expected value is given in in parentheses. For reference, the dimer masses of LsALDH16 and HsALDH16A1 are 151.6 kDa and 170.3 kDa, respectively.

c

Goodness-of-fit parameter from FoXS using a dimer model (Fig. 4).