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. 2019 Feb 15;20:137. doi: 10.1186/s12864-019-5497-4

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — PLAIDOH reveals global patterns of LCP co-expression. LncRNA expression (log10 FPKM) (a & c) or LCP correlation (−log10 Spearman adjusted p-value) (b & d), are plotted relative to genomic distance from each lncRNA to a coding gene (a & b) or the nearest enhancer (c & d) within 400 kb regions flanking the lncRNA. LCPs with positive Spearman correlation coefficients (rho) are plotted in the upper half of each plot; those with negative Spearman correlation coefficients (rho) are plotted in the lower half. Black points highlight LCPs with adjusted Spearman p-values < 0.05 or FPKM > 1