Fig. 4.

Ploidy, zygosity, and microdiversity of recovered eukaryotic genomes. a Histogram of the frequencies of the four most abundant variants at each variant site in an isolate genome of C. parapsilosis and in a genome of C. parapsilosis recovered in this study. Black, red, dark blue, and light blue bars indicate the abundances of the most abundant, second, third, and fourth most abundant variant, respectively. b For each genome, black bars indicate the percentage of variant sites that are multiallelic (contain more variants at a site than would be expected based upon ploidy alone). Haplotypes with more than two alleles are also considered to be multiallelic. A box plot compares the values from genomes originating from infant guts vs. the NICU room. c For each genome, black bars indicate the number of heterozygous variants per kb across the entire assembled genome