Subject area |
Biology |
More specific subject area |
Protein Synthesis, Translational Control, Ribosome, Bioinformatics, Transcriptomics, Translatomics |
Type of data |
Table and figures |
How data was acquired |
Ribosome profiling and RNA-Seq of wild-type or knockout yeast strains were performed. Sequences were obtained using Illumina HiSeq. 2000. |
Data format |
Raw and analyzed |
Experimental factors |
Saccharomyces cerevisiae BY4741 wild-type strain and BY4741-based strains with TMA20, TMA64 or both TMA20 and TMA64 knockouts were maintained in rich (YPD) or minimal (SD) media. |
Experimental features |
In the mid-log exponential phase, yeast cells were pretreated with cycloheximide and collected. cDNA libraries of ribosome-bound mRNA and total mRNA from wild-type and knockout strains were performed as described previously [1]. Sequenced reads were trimmed, read mapping and counting was performed. |
Data source location |
Moscow State University (Moscow, Russia) |
Data accessibility |
Analyzed data is presented in the article. Raw RNA-Seq and Ribo-Seq data as well as all gene counts are available in NCBI Gene Expression Omnibus (GEO) repository under GEO accession GSE122039 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE122039). |
Related research article |
N/A |