Table 2.

Mapping of reads to scaffold and reference genome^a

Scaffold	Read mapping rate (%)
	IFM54693	IFM55053	IFM57535	IFM58503	IFM59894	IFM59975	IFM60519	IFM60655	IFM61224	IFM61226
IFM54693	74.90	89.18	89.22	89.11	87.68	90.86	89.09	89.74	89.98	89.08
IFM55053	76.22	98.69	95.38	95.94	91.78	95.94	95.99	93.74	94.60	96.27
IFM57535	76.93	96.16	98.50	96.20	92.51	96.59	95.80	94.62	95.92	95.71
IFM58503	76.40	96.22	95.64	98.28	91.74	96.09	95.58	93.97	94.87	95.98
IFM59894	77.13	95.05	94.93	94.69	98.41	96.00	94.85	95.36	95.71	94.65
IFM59975	77.67	95.81	95.68	95.68	92.72	98.90	95.37	95.30	96.01	95.66
IFM60519	76.88	96.84	95.84	96.18	92.46	96.37	98.69	94.60	95.70	96.09
IFM60655	78.32	95.46	95.52	95.43	94.08	97.15	95.44	98.55	96.35	95.41
IFM61224	76.38	93.74	94.32	93.81	91.79	95.31	94.03	93.75	96.93	93.54
IFM61226	75.89	95.87	94.50	95.33	91.08	95.43	94.86	93.32	94.16	97.66
NRRL3357a	72.53	92.65	91.60	93.00	88.63	92.96	92.50	90.65	90.72	92.84
RIB40	78.12	96.16	96.38	96.01	93.43	97.26	96.07	96.23	96.64	95.78

^aThe sequence reads of the isolates were mapped onto their scaffolds as well as onto the genome sequence of RIB40, and the percentages of successful mapping are shown. The highest mapping (black cells) and the second highest mapping (grey cells) are indicated.