Table 3.
List of outbreak isolates and corresponding metadata, single- and multi-locus sequence types, and species.
| Isolate name | Source (general) | Source (specific) | Collection date | Isolation date | Production date/batcha | panC groupb | MLST STc | rpoB ATd | Closest type strain (ANI)e |
|---|---|---|---|---|---|---|---|---|---|
| FOOD_10_18_16_LFTOV_NA_R9-6400 | Food | Leftovers | 9-Oct-16 | 18-Oct-16 | Unknown | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_18_16_LFTOV_NA_R9-6401 | Food | Leftovers | 9-Oct-16 | 18-Oct-16 | Unknown | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_18_16_LFTOV_NA_R9-6402 | Food | Leftovers | 9-Oct-16 | 18-Oct-16 | Unknown | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_1B_R9-6388 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 1/B | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_1B_R9-6389 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 1/B | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_1B_R9-6390 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 1/B | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_1B_R9-6391 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 1/B | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_2A_R9-6386 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 2/A | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_2A_R9-6387 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 2/A | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_2H_R9-6392 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 2/H | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_2H_R9-6393 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 2/H | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_2H_R9-6394 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 2/H | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_2H_R9-6395 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 2/H | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT1_2H_R9-6396 | Food | Restaurant 1 | 6-Oct-16 | 19-Oct-16 | 2/H | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT2_2A_R9-6397 | Food | Restaurant 2 | 6-Oct-16 | 19-Oct-16 | 2/A | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT2_2A_R9-6398 | Food | Restaurant 2 | 6-Oct-16 | 19-Oct-16 | 2/A | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT2_2A_R9-6399 | Food | Restaurant 2 | 6-Oct-16 | 19-Oct-16 | 2/A | III | 26 | 125 | B. paranthracis MN5 (97.6) |
| FOOD_10_19_16_RSNT3_1E_R9-6407 | Food | Restaurant 3 | 6-Oct-16 | 19-Oct-16 | 1/E | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT3_2A_R9-6403 | Food | Restaurant 3 | 6-Oct-16 | 19-Oct-16 | 2/A | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT3_2A_R9-6404 | Food | Restaurant 3 | 6-Oct-16 | 19-Oct-16 | 2/A | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT3_2A_R9-6405 | Food | Restaurant 3 | 6-Oct-16 | 19-Oct-16 | 2/A | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT4_2B_R9-6408 | Food | Restaurant 4 | 6-Oct-16 | 19-Oct-16 | 2/B | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT4_2B_R9-6409 | Food | Restaurant 4 | 6-Oct-16 | 19-Oct-16 | 2/B | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT5_1C_R9-6411 | Food | Restaurant 5 | 6-Oct-16 | 19-Oct-16 | 1/C | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| HUMN_10_18_16_FECAL_NA_R9-6384 | Human | Feces | 7-Oct-16 | 18-Oct-16 | NA | III | 26 | 125 | B. paranthracis MN5 (97.6) |
| HUMN_10_18_16_FECAL_NA_R9-6385 | Human | Feces | 8-Oct-16 | 18-Oct-16 | NA | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| HUMN_10_18_16_FECAL_NA_R9-6412 | Human | Feces | 8-Oct-16 | 18-Oct-16 | NA | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| HUMN_10_19_16_FECAL_NA_R9-6381 | Human | Feces | 7-Oct-16 | 19-Oct-16 | NA | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| HUMN_10_19_16_FECAL_NA_R9-6382 | Human | Feces | 7-Oct-16 | 19-Oct-16 | NA | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| HUMN_10_19_16_FECAL_NA_R9-6383 | Human | Feces | 7-Oct-16 | 19-Oct-16 | NA | III | 26 | 125 | B. paranthracis MN5 (97.5) |
| FOOD_10_19_16_RSNT3_1E_R9-6406 | Food | Restaurant 3 | 6-Oct-16 | 19-Oct-16 | 1/E | IV | 24 | 92 | B. cereus ATCC 14579 (98.9) |
| FOOD_10_19_16_RSNT5_1C_R9-6410 | Food | Restaurant 5 | 6-Oct-16 | 19-Oct-16 | 1/C | IV | 24 | 92 | B. cereus ATCC 14579 (98.9) |
| HUMN_10_26_16_FECAL_NA_R9-6413 | Human | Feces | 8-Oct-16 | 26-Oct-16 | NA | IV | 142 | 92 | B. cereus ATCC 14579 (98.8) |
a
Production date is designated by either 1 or 2; batch is one of A through H.
b
panC group assigned in silico using BTyper 2.2.0.
c
Multi-locus sequence typing (MLST) sequence type (ST) assigned in silico using BTyper 2.2.0.
d
rpoB allelic type (AT) determined using Sanger sequencing and verified in silico using BTyper 2.2.0.
e
ANI, average nucleotide identity calculated using FastANI.