Table 2.

Variations of the expression of genes involved in glycolysis, TCA cycle and formation of acetyl-coA.

Name	Product	Gene size	RNA-seq values (minimal medium)	RNA-seq values (bile salts)	Fold change	Fold change	p value
		(bp)	RPKM	RPKM		(Log2)
aceE	Pyruvate dehydrogenase E1	2663	6420	11797	−1.8	−0.88	1.188E-02
aceF	Dihydrolipoyllysine-residue acetyltransferase	1892	2620	3886	−1.5	−0.57	6.618E-02
ackA	acetate kinase	1202	2740	4056	−1.5	−0.57	7.020E-02
acs	acetyl-coenzyme A synthetase	1958	2188	837	2.6	1.39	1.897E-04
eno	Enolase	1298	9777	15019	−1.5	−0.62	6.921E-02
fbaA	Fructose-bisphosphate aldolase class 2	1079	3314	3828	−1.2	−0.21	4.847E-01
fbaB	Fructose-bisphosphate aldolase class 1	1124	943	837	1.1	0.17	4.857E-01
fbp	Fructose-1.6-bisphosphatase	998	3314	5750	−1.7	−0.79	1.384E-02
fumA	Fumarate hydratase class I. aerobic	1646	7038	9348	−1.3	−0.41	1.869E-01
fumB	Fumarate hydratase class I. anaerobic	1646	771	415	1.9	0.90	5.607E-05
fumC	Fumarate hydratase class II	1403	1122	884	1.3	0.34	1.468E-01
gapA	glyceraldehyde-3-phosphate dehydrogenase A	995	25736	36899	−1.4	−0.52	1.405E-01
glk	glucokinase	965	832	912	−1.1	−0.13	6.037E-01
gltA	Citrate synthase	1283	7479	15175	−2.0	−1.02	7.423E-04
gpmA	bisphosphoglycerate-dependent phosphoglycerate	752	10216	19188	−1.9	−0.91	4.772E-03
gpmM	bisphosphoglycerate-independent phosphoglycerate	1544	1282	1810	−1.4	−0.50	7.967E-02
icd	Isocitrate dehydrogenase [NadP]	1250	17987	30473	−1.7	−0.76	1.944E-02
lpd	Dihydrolipoyl dehydrogenase	1424	10039	20656	−2.1	−1.04	1.135E-03
mdh	Malate dehydrogenase	938	5402	8506	−1.6	−0.66	2.854E-02
pfkA	6-phosphofructokinase isozyme 1	962	1283	4244	−3.3	−1.72	1.369E-11
pgi	glucose-6-phosphate isomerase	1649	4480	5251	−1.2	−0.23	4.652E-01
pgk	Phosphoglycerate kinase	1163	2762	4408	−1.6	−0.67	3.299E-02
pta	Phosphate acetyltransferase	2144	1355	1764	−1.3	−0.38	1.523E-01
pykA	Pyruvate kinase II	1442	1163	1360	−1.2	−0.23	3.798E-01
pykF	Pyruvate kinase I	1412	2019	5004	−2.5	−1.31	7.772E-07
sdhA	Succinate dehydrogenase flavoprotein subunit	1766	8036	14377	−1.8	−0.84	1.123E-02
sdhB	Succinate dehydrogenase iron-sulfur subunit	716	4221	6984	−1.7	−0.73	2.521E-02
sdhC	Succinate dehydrogenase cytochrome b556 subunit	389	4494	8916	−2.0	−0.99	1.946E-03
sdhD	Succinate dehydrogenase hydrophobic membrane	347	2126	3986	−1.9	−0.91	6.527E-04
sucA	2-oxoglutarate dehydrogenase E1 component	2801	18453	38038	−2.1	−1.04	1.922E-03
sucB	Dihydrolipoyllysine-residue succinyltransferase	1217	9625	19122	−2.0	−0.99	5.780E-03
sucC	Succinyl-CoA synthetase beta chain	1168	7109	12688	−1.8	−0.84	1.840E-02
sucD	Succinyl-CoA ligase [adP-forming] subunit α	869	9683	12034	−1.2	−0.31	3.924E-01
tpiA	Triosephosphate isomerase	767	4649	4399	1.1	0.08	8.098E-01

¹Values shown in bold are significant.