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. 2019 Feb 8;16(3):295–308. doi: 10.1080/15476286.2019.1572436

Table 1.

Main features of the viroid RNAs imaged by AFM in this work.

Family Viroid Length (nt) Variant RNA analyzed
(GenBank acc no.)
Features [Mg2+] in the folding buffer*
Pospiviroidae PSTVd 359 PSTVd-ml(+)
(U23058.1)
ml (+) RNA, in vitro transcript (IVT) 0
4
PSTVd-mc(+)
(AJ634596.1)
mc (+) RNA, isolated from infected tissue 4
Avsunviroidae PLMVd 337 PLMVd-ml(+)wt
(AJ005303.1)
ml (+) RNA (wild type), IVT 0
4
PLMVd-ml(+)mut ml (+) RNA (mutant with kissing-loop disrupted), IVT 4
ELVd 335 ELVd-ml(+)
(AJ536613)
ml (+) RNA, IVT 0
4
ELVd-ml(-)
(AJ536613)
ml (-) RNA, IVT 4

*The folding buffer is composed of 100 mM HEPES pH 7.4 and 100 mM NaCl, either lacking Mg2+ or supplemented with 4 mM MgCl2.