Table 4.

Selected lncRNAs and their properties.

	FPKM							FPKM
lncRNA	Con	Flu	Fold change	Chromosome locus	bp	Type	Neighboring genes	Con	Flu	Fold change
AC015849.2	8	491	60	chr17:34,195,970–34,212,867	662	anti-sense	CCL5	0.02	2,988	147,688
							TAF15	219	44	—5
PSMB8-AS1	11	211	19	chr6:32,811,862–32,814,272	1,267	anti-sense	PSMB8	9	51	5
							TAP1	8	253	33
RP1-71H24.1	14	257	18	chr12:113,345,432–113,455,556	575	anti-sense	OAS2	0.12	173	1,470
							OAS3	19	181	10
CTD-2639E6.9	10	159	15	chr19:49,467,231–49,468,415	819	lincRNA	FTL	8,488	3,245	—3
							BAX	ND	ND	ND
AC007283.5	142	1,261	9	chr2:202,031,687–202,032,269	445	3 prime overlapping	CASP10	2	14	6
							CFLAR	27	137	5
PSORS1C3	31	245	8	chr6:31,141,511–31,145,676	593	Sense intronic	POU5F1	2	22	13
							HLA-C	24	412	17
RP11-670E13.5	337	1,880	6	chr17:54,966,240–54,969,202	538	anti-sense	TRIM25	27	199	7
							DGKE	ND	ND	ND

Fold changes: from RNA-seq data

bp: length in terms of base pairs

ND: Not detected by RNA-seq

- number: Downregulation

FPKM: Fragments Per Kilo base of transcript per Million mapped reads

CCL5: Chemokine (C-C motif) ligand 5

TAF15: TATA Box Binding Protein (TBP)-Associated Factor

PSMB8: Proteasome Subunit Beta 8

TAP1: Transporter 1, ATP-Binding Cassette

OAS2: 2ʹ-5ʹ-Oligoadenylate Synthetase 2

OAS3: 2ʹ-5ʹ-Oligoadenylate Synthetase 3

FTL: Ferritin, Light Polypeptide

BAX: BCL2-Associated X Protein

CASP10: Caspase 10, Apoptosis-Related Cysteine Peptidase

CFLAR: CASP8 and FADD-Like Apoptosis Regulator

POU5F1: POU Class 5 Homeobox 1

HLA-C: Major Histocompatibility Complex, Class I, C

TRIM25: Tripartite Motif Containing 25

DGKE: Diacylglycerol Kinase, Epsilon